Serialized Form

Package Accession

Class Accession.AccACCwizardPopup extends java.awt.Frame implements Serializable

serialVersionUID: 0L

Serialized Fields

cs

Accession cs

instance of the main class

baseImageFile

java.lang.String baseImageFile

base name of the image for use in the title

changeGuiFlag

boolean changeGuiFlag

flag to indicating that the GUI may have changed and that it should be rebuilt.

VIEW_WIDTH

int VIEW_WIDTH

Width of the frame

VIEW_HEIGHT

int VIEW_HEIGHT

Height of the frame

MAX_TEXT_FIELD_WIDTH

int MAX_TEXT_FIELD_WIDTH

mbar

java.awt.MenuBar mbar

menu bar for the frame

fileMenu

java.awt.Menu fileMenu

"File" pull down Menu list

editMenu

java.awt.Menu editMenu

"Edit" pull down Menu list

helpMenu

java.awt.Menu helpMenu

"Help" pull down Menu list

editPane

java.awt.ScrollPane editPane

Scrollable edit pane that holds the gridPanel

gridPanel

java.awt.Panel gridPanel

Where put the grid of (Label,TextField) name value pairs

controlPanel

java.awt.Panel controlPanel

Control panel for the main frame

ms

MenuSupport ms

Menu support functions using Hashtables to tack what is active.

sp

java.awt.ScrollPane sp

Scroll pane to hold the Name-Value scrollable panel

aH

java.awt.Adjustable aH

aV

java.awt.Adjustable aV

msgTextArea

java.awt.TextArea msgTextArea

Text area GUI for message rporting

textAreaFontSize

int textAreaFontSize

font size

textFontFamily

java.lang.String textFontFamily

font family for message window

fontFamily

java.lang.String fontFamily

smallFont

java.awt.Font smallFont

mediumFont

java.awt.Font mediumFont

largeFont

java.awt.Font largeFont

textFieldFont

java.awt.Font textFieldFont

dispName

java.lang.String dispName

Name of image to display

dbS

DbSample dbS

Name of sample to display

acc

DbAccession acc

Accession database instance if opened

nData

int nData

# of name-value pair data items

fieldNameData

java.lang.String[] fieldNameData

FieldName data [0:nData-1] has a Label with the data.

helpData

java.lang.String[] helpData

Optional help data [0:nData-1] if not null, then this is info on the corresponding fieldNameData.

valueData

java.lang.String[] valueData

Value user data [0:nData-1] for a TextField with this data on the right

changedValueData

java.lang.String[] changedValueData

Changed user data [0:nData-1] if not null, then make a TextField with this data on the right else empty Label.

dataLabel

java.awt.Label[] dataLabel

Left [0:nData-1] labels if not using checkbox

dataLabelColor

java.awt.Color[] dataLabelColor

Label color [0:nData-1] Colors if used

dataTextField

java.awt.TextField[] dataTextField

Right [0:nData-1] TextFields if used

helpList

java.lang.String[] helpList

list of help info for each accession DB field

isVisibleFlag

boolean isVisibleFlag

Set true if window is visible

changedAccFieldsDataFlag

boolean changedAccFieldsDataFlag

Flag indicating that the data fields were edited

useLogCB

java.awt.Checkbox useLogCB

the "Use log" checkbox

useLogFlag

boolean useLogFlag

set from "Use log" checkbox

logReportFlag

boolean logReportFlag

set from "Log report" checkbox menu item

viewWidth

int viewWidth

Size of the viewport in the scrollable window

viewHeight

int viewHeight

Class Accession.AccCALIBwizardPopup extends java.awt.Frame implements Serializable

serialVersionUID: 0L

Serialized Fields

cs

Accession cs

instance of the main class

dbS

DbSample dbS

link to active sample

calDataMode

int calDataMode

calDataMode of form CAL_WEDGE, CAL_SPOTLIST

calDataList

float[] calDataList

calDataList is calibration value list if not null

nCalSteps

int nCalSteps

size of calDataList is calibration value list if not null

grayDataList

int[] grayDataList

grayDataList is peak gray list if not null.

nGrayPeaks

int nGrayPeaks

size of the grayDataList is peak gray list if not null

calUnits

java.lang.String calUnits

calUnits is name of calibration units if not null

calTypeStr

java.lang.String calTypeStr

String name of calDataMode.

viewWidth

int viewWidth

viewHeight

int viewHeight

mbar

java.awt.MenuBar mbar

menu bar for the frame

fileMenu

java.awt.Menu fileMenu

"File" pull down Menu list

viewMenu

java.awt.Menu viewMenu

"View" pull down Menu list

editMenu

java.awt.Menu editMenu

"Edit" pull down Menu list

helpMenu

java.awt.Menu helpMenu

"Help" pull down Menu list

ms

MenuSupport ms

Menu support functions using Hashtables to tack what is active.

activeBin

int activeBin

active bin idx [0:nHist-1] else -1

hist

int[] hist

freq hist[0:nHist-1].

sHist

int[] sHist

modified freq sHist[0:nHist-1].

drawIntoImageFlag

boolean drawIntoImageFlag

set if draw plot to GIF file

msgTextArea

java.awt.TextArea msgTextArea

Text area GUI for message rporting

textAreaFontSize

int textAreaFontSize

font size

textFontFamily

java.lang.String textFontFamily

font family for message window

fontFamily

java.lang.String fontFamily

smallFont

java.awt.Font smallFont

mediumFont

java.awt.Font mediumFont

largeFont

java.awt.Font largeFont

buttonFont

java.awt.Font buttonFont

peakNbrFontSize

int peakNbrFontSize

font size for peak number labels

dispName

java.lang.String dispName

Name of image to display

dispPixC

char[] dispPixC

Picture buffer char[] of image to display . Note this is read either from the pix? variable or from the file if the pix? variable is null.

pixWidth

int pixWidth

The width of the current image

pixHeight

int pixHeight

The width of the current image

nPixels

int nPixels

The pixWidth*pixHeight

oGifFileName

java.lang.String oGifFileName

Full path of image to "Save image" in

useLogCB

java.awt.Checkbox useLogCB

the "Use log" checkbox

useLogFlag

boolean useLogFlag

set from "Use log" checkbox

useSaveImageFlag

boolean useSaveImageFlag

set from "Save image" Command

logReportFlag

boolean logReportFlag

set from "Log report" checkbox menu item

optBkgrdColor

java.awt.Color optBkgrdColor

histColor

java.awt.Color histColor

histTopColor

java.awt.Color histTopColor

odColor

java.awt.Color odColor

calibPeakColor

java.awt.Color calibPeakColor

calibration peaks on histogram color

labelColor

java.awt.Color labelColor

peakNbrColor

java.awt.Color peakNbrColor

peak number color

peakCalTblTF

java.awt.TextField[][] peakCalTblTF

Array of TextFields used in constructing the Peak Calibration Table editPanel. Not all entries are used. It is of size [0:peakCalTblRows-1][0:peakCalTblCols-1].

isVisibleFlag

boolean isVisibleFlag

If the Histogram is visible

changedAccCalibrDataFlag

boolean changedAccCalibrDataFlag

Flag indicating that the accession calibration fields were defined or were edited

grayValueListChangedFlag

boolean grayValueListChangedFlag

Flag indicating that the accession calibration gray value fields were defined or were edited

calibTbl

Table calibTbl

calibration data file table

Class Accession.AccROIwizardPopup extends java.awt.Frame implements Serializable

serialVersionUID: 0L

Serialized Fields

cs

Accession cs

instance of the main class

changeGuiFlag

boolean changeGuiFlag

flag to indicating that the GUI may have changed and that it should be rebuilt.

VIEW_WIDTH

int VIEW_WIDTH

Width of the frame

VIEW_HEIGHT

int VIEW_HEIGHT

Height of the frame

mbar

java.awt.MenuBar mbar

menu bar for the frame

fileMenu

java.awt.Menu fileMenu

"File" pull down Menu list

viewMenu

java.awt.Menu viewMenu

"View" pull down Menu list

roiMenu

java.awt.Menu roiMenu

"Roi" pull down Menu list

spotListMenu

java.awt.Menu spotListMenu

"Spot list" pull down Menu list

helpMenu

java.awt.Menu helpMenu

"Help" pull down Menu list

controlPanel

java.awt.Panel controlPanel

Control panel for the main frame

ms

MenuSupport ms

Menu support functions using Hashtables to tack what is active.

sp

java.awt.ScrollPane sp

Scroll pane to hold the image

aH

java.awt.Adjustable aH

aV

java.awt.Adjustable aV

siCanvas

AccROIwizardPopup.ScrollableImageCanvas siCanvas

ScrollableImageCanvas to hold the image

msgTextArea

java.awt.TextArea msgTextArea

Text area GUI for message rporting

textAreaFontSize

int textAreaFontSize

font size

textFontFamily

java.lang.String textFontFamily

font family for message window

fontFamily

java.lang.String fontFamily

smallFont

java.awt.Font smallFont

mediumFont

java.awt.Font mediumFont

largeFont

java.awt.Font largeFont

dispName

java.lang.String dispName

Name of image to display "Rsample" or "Sample"

dispPixC

char[] dispPixC

Picture buffer char[] of image to display . Note this is read either from the pix? variable or from the file if the pix? variable is null.

dbS

DbSample dbS

Sample to display. /** Sample instance structure

pixWidth

int pixWidth

The width of the current image

pixHeight

int pixHeight

The width of the current image

nPixels

int nPixels

The pixWidth*pixHeight

windmpSize

int windmpSize

Code for winDump size. 0 is off, sizes 3x3 to 21z21 are legal

oGifFileName

java.lang.String oGifFileName

Full path of image to "Save image" in

isVisibleFlag

boolean isVisibleFlag

Set true if window is visible

drawRoiCB

java.awt.Checkbox drawRoiCB

the "Draw ROI" checkbox

drawRoiFlag

boolean drawRoiFlag

set from "Draw ROI" checkbox

drawCWroiCB

java.awt.Checkbox drawCWroiCB

the "Draw CW ROI" checkbox

drawCWroiFlag

boolean drawCWroiFlag

set from "Draw CW ROI" checkbox

drawCalCWroiCB

java.awt.Checkbox drawCalCWroiCB

the "Draw CAL CW ROI" checkbox

drawCalCWroiFlag

boolean drawCalCWroiFlag

set from "Draw calibration wedge ROI overlay" checkbox and checkbox menu item.

drawMeasSpotListFlag

boolean drawMeasSpotListFlag

set from "Draw spot list overlays" checkbox menu item.

drawMeasSpotListLabelsFlag

boolean drawMeasSpotListLabelsFlag

set from "Draw measured spot labels overlays" checkbox menu item

useLogCB

java.awt.Checkbox useLogCB

the "Use log" checkbox

useLogFlag

boolean useLogFlag

set from "Use log" checkbox

useSaveImageFlag

boolean useSaveImageFlag

set from "Save image" Command

logReportFlag

boolean logReportFlag

set from "Log report" checkbox menu item

viewWidth

int viewWidth

viewHeight

int viewHeight

pImg

java.awt.Image pImg

Image to display

roiX1

int roiX1

ULHC ROI window set by (C-U). Note (C-C) clears this.

roiY1

int roiY1

ULHC ROI window set by (C-U). Note (C-C) clears this.

roiX2

int roiX2

LRHC ROI window set by (C-L). Note (C-C) clears this.

roiY2

int roiY2

LRHC ROI window set by (C-L). Note (C-C) clears this.

cwx1

int cwx1

local ULHC CW ROI window. (C-W) sets ROI to the CW ROI.

cwy1

int cwy1

local ULHC CW ROI window. (C-W) sets ROI to the CW ROI.

cwx2

int cwx2

local LRHC CW ROI window. (C-W) sets ROI to the CW ROI.

cwy2

int cwy2

local LRHC CW ROI window. (C-W) sets ROI to the CW ROI.