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Uses of Class
ImageData

Uses of ImageData in <Unnamed>
 

Fields in <Unnamed> declared as ImageData
 ImageData ImageDataMeas.id
          Instance of ImageData for extended classes
 ImageData ImageDataROI.id
          Instance of ImageData for extended classes
 ImageData ImageDataSpotList.id
          Instance of ImageData for extended classes
private  ImageData DrawHistogram.iData
          link to data related ImageData instance
private static ImageData EventMenu.iData
           
private  ImageData EventScroller.iData
          ImageData instance of current data sample being processed
 ImageData ImageScroller.iData
          Image data for mapGraytoOD[] that will be set later...
(package private)  ImageData ImageXform.iData
          Image data instance to use we get data from either iImg or oImg
 ImageData Flicker.iData1
          image 1 picture data associated with ImageScroller i1IS (left)
 ImageData Flicker.iData2
          image 2 picture data associated with ImageScroller i2IS (right)
 

Methods in <Unnamed> that return ImageData
 ImageData ImageData.loadBlankImageData(java.lang.String name, int w, int h)
          loadBlankImageData() - create and return a blank ImageData object [NOTE] This code has a bug since it does not create the empty window correctly.
 ImageData ImageIO.loadGifOrJpegPixIntoImageData(java.lang.String imageFile, ImageData oldImageData, int imgNbr, boolean reportErrorMsgsFlag)
          loadGifOrJpegPixIntoImageData() - read GIF or JPEG pix file into ImageData object which includes an iPix[] of the data.
 ImageData ImageIO.loadJpeg2000PixIntoImageData(java.lang.String imageFile, ImageData oldImageData, int imgNbr, boolean reportErrorMsgsFlag)
          loadJpeg2000PixIntoImageData() - read JPEG 2000 pix file into ImageData object which includes a iPix[] of the data.
 ImageData ImageIO.loadPixIntoImageData(java.lang.String imageFile, ImageData oldImageData, int imgNbr, boolean reportErrorMsgsFlag)
          loadPixIntoImageData() - read pix file into ImageData obj.
 ImageData ImageIO.loadPPXpixIntoImageData(java.lang.String imageFile, ImageData oldImageData, int imgNbr, boolean reportErrorMsgsFlag)
          loadPPXpixIntoImageData() - read GELLAB-II PPX pix file into ImageData object which includes a iPix[] of the data.
 ImageData ImageIO.loadTiffPixIntoImageData(java.lang.String imageFile, ImageData oldImageData, int imgNbr, boolean reportErrorMsgsFlag)
          loadTiffPixIntoImageData() - read Tiff pix file into ImageData object which includes a iPix[] of the data.
(package private)  ImageData Flicker.lookupCurrentImageData()
          lookupCurrentImageData() - lookup the current active ImageData if it is left or right
 ImageData ImageIO.setImageToImageData(java.lang.String imageFile, java.awt.Image iImg, boolean blackIsZeroFlag, ImageData imgData, float[] mapGraytoOD, int imgNbr)
          setImageToImageData() - set the Image and associated parameters to the ImageData object imgData.
 

Methods in <Unnamed> with parameters of type ImageData
 boolean CalibrateOD.calcHistFindPeaksAndExtrapolate(ImageData iData)
          calcHistFindPeaksAndExtrapolate() - set up histogram, peaks and extrpolate map for the current ROI.
 boolean CalibrateOD.demo_setDefaultWedgeData_LeukemiaGels(ImageData iData)
          demo_setDefaultWedgeData_LeukemiaGels() - setup the ND wedge data for the 4 demo GELLAB-II PPX leukemia gels release with Flicker.
 void ImageXform.doXform(ImageData iData)
          doXform() - transform iPix[] into oPix[] image data by legal transform Then create the oImg.
 boolean Plugin1.fctCalc(Flicker flkS, ImageData iData, int[] oPix)
          fctCalc() - called to perform the image function
 boolean Plugin2.fctCalc(Flicker flkS, ImageData iData, int[] oPix)
          fctCalc() - called to perform the image function
 boolean Plugin3.fctCalc(Flicker flkS, ImageData iData, int[] oPix)
          fctCalc() - called to perform the image function
static boolean PluginMgr.fctCalc(Flicker flk, int efNbr, ImageData iData, int[] oPix)
          fctCalc() - called to perform the image function
 boolean Util.getAnnotationFromServer(ImageData iData, Spot s)
          getAnnotationFromServer() - get the gel iData spot s data from proteomic web server
 java.lang.String Util.getFullCalFilePath(ImageData iData)
          getFullCalFilePath() - compute the .cal file from the qualified imageFile If there is a subdirectory before the baseFile, then strip out the directory name and add it before the actual base file.
(package private)  java.lang.String CalibrateOD.getStateStr(ImageData iData, java.lang.String fileName)
          getStateStr() - get this calibration state as a string
 java.lang.String SliderState.getStateStr(ImageData iData, java.lang.String fileName)
          getStateStr() - get this scroller state as a string
 boolean CalibrateOD.inheritNDwedgeODvalues(ImageData iData)
          inheritNDwedgeODvalues() - if current calibration does NOT have ND wedge OD values, but the paired gel DOES, then inherit its OD wedge values and units to avoid having to type it.
 ImageData ImageIO.loadGifOrJpegPixIntoImageData(java.lang.String imageFile, ImageData oldImageData, int imgNbr, boolean reportErrorMsgsFlag)
          loadGifOrJpegPixIntoImageData() - read GIF or JPEG pix file into ImageData object which includes an iPix[] of the data.
 ImageData ImageIO.loadJpeg2000PixIntoImageData(java.lang.String imageFile, ImageData oldImageData, int imgNbr, boolean reportErrorMsgsFlag)
          loadJpeg2000PixIntoImageData() - read JPEG 2000 pix file into ImageData object which includes a iPix[] of the data.
 ImageData ImageIO.loadPixIntoImageData(java.lang.String imageFile, ImageData oldImageData, int imgNbr, boolean reportErrorMsgsFlag)
          loadPixIntoImageData() - read pix file into ImageData obj.
 ImageData ImageIO.loadPPXpixIntoImageData(java.lang.String imageFile, ImageData oldImageData, int imgNbr, boolean reportErrorMsgsFlag)
          loadPPXpixIntoImageData() - read GELLAB-II PPX pix file into ImageData object which includes a iPix[] of the data.
 ImageData ImageIO.loadTiffPixIntoImageData(java.lang.String imageFile, ImageData oldImageData, int imgNbr, boolean reportErrorMsgsFlag)
          loadTiffPixIntoImageData() - read Tiff pix file into ImageData object which includes a iPix[] of the data.
 boolean ImageDataSpotList.lookupProtIDandNameToSpotList(ImageData iData)
          lookupProtIDandNameToSpotList() - if the gel is clickable and the user enabled the clickable DB checkbox, then search the clickableCGIbaseURL protein database for all spots in the spot list and for those that have matches, update the Spot.id and Spot.name.
 boolean ImageScroller.processBCimage(ImageData id)
          processBCimage() - process colormap image by running the filter.
 boolean ScrollableImageCanvas.processBCimage(ImageData id)
          processBCimage() - process colormap image by running the filter.
 boolean Util.readCalibrationFile(ImageData iData)
          readCalibrationFile() - read the image calibration from the "cal/{image file base}.cal" file or "cal/{image subdirectory}-DIR-{image file base}.cal" file.
 void ImageIO.restoreImage(ImageData iDataR, boolean reportErrorMsgsFlag)
          restoreImage() - restore images from original copy (iPix) that was first read in.
static void ImageDataMeas.setCircleMaskRadius(int radius, ImageData iData)
          setCircleMaskRadius() - set the circle radius for measurement and background, as well as the circle mask given the radius.
 void ImageScroller.setImageData(ImageData iData)
          setImageData() - change the ImageData for the panel.
 void ImageScroller.setImageData(ImageData iData, java.awt.Point xyImg)
          setImageData() - change the ImageData for the panel.
 ImageData ImageIO.setImageToImageData(java.lang.String imageFile, java.awt.Image iImg, boolean blackIsZeroFlag, ImageData imgData, float[] mapGraytoOD, int imgNbr)
          setImageToImageData() - set the Image and associated parameters to the ImageData object imgData.
 void ImageXform.softDoneWithTransform(ImageData iData, java.lang.String name, java.lang.String useXformName)
          softDoneWithTransform() - ImageXform thread calls when xform completed.
static java.lang.String Windump.winDump(int[] pix, int x1, int x2, int y1, int y2, int pixWidth, int pixHeight, java.lang.String title, int printMode, int maxColsToPrint, int stepSize, ImageData iData)
          winDump() - Draw a window from picture frlo the lower 8-bit/pixel data in an int[] 'pix' at
 boolean Util.writeCalibrationFile(ImageData iData)
          writeCalibrationFile() - write the image calibration into the "cal/{{demo image file base}.cal" file.
 

Constructors in <Unnamed> with parameters of type ImageData
ImageDataMeas(ImageData iData)
          ImageData() - Constructor for spot measurement extension
ImageDataROI(ImageData id)
          ImageDataROI() - Constructor.
ImageDataSpotList(ImageData id)
          ImageDataSpotList() - Constructor for Spot Lists
ImageScroller(Flicker flk, java.lang.String name, java.lang.String title, ImageData iData, int preferredWidth, int preferredHeight, int def_delay, int min_delay, int max_delay, boolean useScrollBarsFlag)
          ImageScroller() - constructor.
ImageXform(Flicker flk, java.lang.String nameLR, ImageData iData, java.lang.String useXform, int externFctNbr)
          ImageXform() - Construct ImageXform object.
 

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