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Packages that use DbSpot | |
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O2Plib.db | |
O2Plib.db.CSD | |
O2Plib.image |
Uses of DbSpot in O2Plib.db |
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Fields in O2Plib.db declared as DbSpot | |
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DbSpot |
DbSpot.bestPairedSpot
ptr to best paired spot for spot-pairing, if not null |
DbSpot |
DbBoundary.dbSpot
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DbSpot[][] |
DbLM.equivLMspotPtr
Linked list of latched DbSpots that correspond to landmarks in the LM set [nbrLandmarks][2]. |
DbSpot |
DbSample.firstSpot
first spot allocated in the linked spot list. |
DbSpot |
DbSample.lastSpot
last spot allocated (optional) |
DbSpot |
DbSample.listG
point to first spot of full spot list - initialized to nulls. |
DbSpot[][] |
DbLM.lmSetPtr
Points to first spot of each LM set in each Sample [0:PARAM_MAXLANDMARKS-1][RSAMPLE:SAMPLE] |
DbSpot |
DbSpot.nextLMspot
ptr to Next LM-set spot if not null |
DbSpot |
DbSpot.nextSpot
ptr to Next spot instance in spot list if not null |
private DbSpot |
DbSample.SsfContentHandler.p
instance of current DbSpot |
DbSpot |
DbSpot.prevSpot
ptr to Previous spot instance in spot list if not null |
DbSpot |
DbSpot.rSpotNext
Next instance for CSD database Rspot linked list |
DbSpot[] |
DbSample.spotList
DbSpot list [0:nTopSpot-1] for DbSpot spots entered by CC #. |
Methods in O2Plib.db that return DbSpot | |
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DbSpot |
DbSample.findSpotByXY(int xT,
int yT,
int distThr,
boolean allSpotsFlag)
findSpotByXY() - find a spot in the spot list that is within distThr of the (x,y) coordinate specified. |
DbSpot[] |
DbLM.getLMsetSpotList(DbSample dbS,
int k)
getLMsetSpotList() - get a list of spots in landmark set k for sample dbS if it exists. |
static DbSpot[] |
DbSpot.getSubListSpotsPairedWithThisSpot(DbSpot spot,
int maxSublistSize)
getSubListSpotsPairedWithThisSpot() - get a sublist of spots (in the other sample) that are paired with this spot. |
Methods in O2Plib.db with parameters of type DbSpot | |
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boolean |
DbSpot.copyValues(DbSpot sp,
boolean copyPointersFlag)
copyValues() - copy values in spot sp into this spot. |
static java.lang.String |
DbSpot.cvSpotToPrettyPrintListStr(DbSpot p1,
boolean addSubPairListFlag)
cvSpotToPrettyPrintListStr() - get the pretty-print features of the specified spot and its pair spot if it is paired. |
static java.lang.String |
DbSpot.cvSpotToPrettyPrintListStr(DbSpot p1,
boolean addSubPairListFlag,
boolean addCCnbrFlag)
cvSpotToPrettyPrintListStr() - get the pretty-print features of the specified spot and its pair spot if it is paired. |
static java.lang.String |
DbSpot.cvSpotToPrintStr(DbSpot p1,
int spotFormatToUse)
cvSpotToPrintStr() - Debugging print the features of the specified spot and print its paired spot features if it is paired. |
static java.lang.String |
DbSpot.cvSpotToPrintStr(DbSpot p1,
int spotFormatToUse,
boolean addCCdataFlag)
cvSpotToPrintStr() - Debugging print the features of the specified spot and print its paired spot features if it is paired. |
java.lang.String |
DbSample.cvtSpotToSpotRecordStr(DbSpot r)
cvtSpotToSpotRecordStr() - convert spot statistics to string depending on the SSF conversion mode. |
java.lang.String |
DbSample.cvtSpotToSpotRecordStr(DbSpot r,
int useSsfFormatMode)
cvtSpotToSpotRecordStr() - convert spot statistics to string depending on the SSF conversion mode. |
java.lang.StringBuffer |
DbSample.cvtSpotToSpotRecordStr(java.lang.StringBuffer s,
DbSpot r)
cvtSpotToSpotRecordStr() - convert spot statistics to string depending on the SSF conversion mode. |
static java.lang.String |
DbSpot.getPrettyPrintSpotStr(DbSpot p1)
getPrettyPrintSpotStr() - get the pretty-print spot features of specified |
static java.lang.String |
DbSpot.getPrettyPrintSpotStr(DbSpot p1,
boolean addCCnbrFlag)
getPrettyPrintSpotStr() - get the pretty-print spot features of specified |
java.lang.String |
DbPairSamples.getSpotPairStr(DbSpot sp)
getSpotPairStr() - get the paired spot string that identifies the samples, LM sets, LM coords,, dP, dL |
static DbSpot[] |
DbSpot.getSubListSpotsPairedWithThisSpot(DbSpot spot,
int maxSublistSize)
getSubListSpotsPairedWithThisSpot() - get a sublist of spots (in the other sample) that are paired with this spot. |
boolean |
DbSample.insertSpot(DbSpot r,
DbSpot sp)
insertSpot() - insert spot r BEFORE spot sp and update spotList[0:nTopSpot-1]. |
boolean |
DbSample.pushSpot(DbSpot r)
pushSpot() - push DbSpot spot into spotList[0:nTopSpot-1]. |
boolean |
DbPairSamples.pushSpotPair(DbSpot rS,
DbSpot sS)
pushSpotPair() - push DbSpot spots pair into spotLists and adjust spot pairing data. |
boolean |
DbSample.removeSpot(DbSpot r)
removeSpot() - remove spot from spotList[0:nTopSpot-1]. |
Constructors in O2Plib.db with parameters of type DbSpot | |
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DbBoundary(DbSample dbSample,
DbSpot dbSpot)
DbBoundary() - Constructor |
Uses of DbSpot in O2Plib.db.CSD |
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Fields in O2Plib.db.CSD declared as DbSpot | |
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DbSpot[] |
CSDnorm.normLSQspots
[0:nSpotsLsq-1] list of spots used in least-square fit norm. |
Uses of DbSpot in O2Plib.image |
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Methods in O2Plib.image that return DbSpot | |
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static DbSpot |
PixFunctions.calcMeanGrayValue(DbSample dbS,
int xC,
int yC,
int size,
DbSpot bkgrdSpot)
calcMeanGrayValue() - compute mean gray value of spot and return the values in a DbSpot instance for sample dbS with (sp.area, sp.density, sp.xMom, sp.yMom, sp.density, sp.mnDensity, sp.dMax, sp.dMin, sp.sxy) Note: the std-deviation of sp.density is saved in sp.sxy. |
Methods in O2Plib.image with parameters of type DbSpot | |
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static DbSpot |
PixFunctions.calcMeanGrayValue(DbSample dbS,
int xC,
int yC,
int size,
DbSpot bkgrdSpot)
calcMeanGrayValue() - compute mean gray value of spot and return the values in a DbSpot instance for sample dbS with (sp.area, sp.density, sp.xMom, sp.yMom, sp.density, sp.mnDensity, sp.dMax, sp.dMin, sp.sxy) Note: the std-deviation of sp.density is saved in sp.sxy. |
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