Uses of Class
O2Plib.db.DbSpot

Packages that use DbSpot
O2Plib.db   
O2Plib.db.CSD   
O2Plib.image   
 

Uses of DbSpot in O2Plib.db
 

Fields in O2Plib.db declared as DbSpot
 DbSpot DbSpot.bestPairedSpot
          ptr to best paired spot for spot-pairing, if not null
 DbSpot DbBoundary.dbSpot
           
 DbSpot[][] DbLM.equivLMspotPtr
          Linked list of latched DbSpots that correspond to landmarks in the LM set [nbrLandmarks][2].
 DbSpot DbSample.firstSpot
          first spot allocated in the linked spot list.
 DbSpot DbSample.lastSpot
          last spot allocated (optional)
 DbSpot DbSample.listG
          point to first spot of full spot list - initialized to nulls.
 DbSpot[][] DbLM.lmSetPtr
          Points to first spot of each LM set in each Sample [0:PARAM_MAXLANDMARKS-1][RSAMPLE:SAMPLE]
 DbSpot DbSpot.nextLMspot
          ptr to Next LM-set spot if not null
 DbSpot DbSpot.nextSpot
          ptr to Next spot instance in spot list if not null
private  DbSpot DbSample.SsfContentHandler.p
          instance of current DbSpot
 DbSpot DbSpot.prevSpot
          ptr to Previous spot instance in spot list if not null
 DbSpot DbSpot.rSpotNext
          Next instance for CSD database Rspot linked list
 DbSpot[] DbSample.spotList
          DbSpot list [0:nTopSpot-1] for DbSpot spots entered by CC #.
 

Methods in O2Plib.db that return DbSpot
 DbSpot DbSample.findSpotByXY(int xT, int yT, int distThr, boolean allSpotsFlag)
          findSpotByXY() - find a spot in the spot list that is within distThr of the (x,y) coordinate specified.
 DbSpot[] DbLM.getLMsetSpotList(DbSample dbS, int k)
          getLMsetSpotList() - get a list of spots in landmark set k for sample dbS if it exists.
static DbSpot[] DbSpot.getSubListSpotsPairedWithThisSpot(DbSpot spot, int maxSublistSize)
          getSubListSpotsPairedWithThisSpot() - get a sublist of spots (in the other sample) that are paired with this spot.
 

Methods in O2Plib.db with parameters of type DbSpot
 boolean DbSpot.copyValues(DbSpot sp, boolean copyPointersFlag)
          copyValues() - copy values in spot sp into this spot.
static java.lang.String DbSpot.cvSpotToPrettyPrintListStr(DbSpot p1, boolean addSubPairListFlag)
          cvSpotToPrettyPrintListStr() - get the pretty-print features of the specified spot and its pair spot if it is paired.
static java.lang.String DbSpot.cvSpotToPrettyPrintListStr(DbSpot p1, boolean addSubPairListFlag, boolean addCCnbrFlag)
          cvSpotToPrettyPrintListStr() - get the pretty-print features of the specified spot and its pair spot if it is paired.
static java.lang.String DbSpot.cvSpotToPrintStr(DbSpot p1, int spotFormatToUse)
          cvSpotToPrintStr() - Debugging print the features of the specified spot and print its paired spot features if it is paired.
static java.lang.String DbSpot.cvSpotToPrintStr(DbSpot p1, int spotFormatToUse, boolean addCCdataFlag)
          cvSpotToPrintStr() - Debugging print the features of the specified spot and print its paired spot features if it is paired.
 java.lang.String DbSample.cvtSpotToSpotRecordStr(DbSpot r)
          cvtSpotToSpotRecordStr() - convert spot statistics to string depending on the SSF conversion mode.
 java.lang.String DbSample.cvtSpotToSpotRecordStr(DbSpot r, int useSsfFormatMode)
          cvtSpotToSpotRecordStr() - convert spot statistics to string depending on the SSF conversion mode.
 java.lang.StringBuffer DbSample.cvtSpotToSpotRecordStr(java.lang.StringBuffer s, DbSpot r)
          cvtSpotToSpotRecordStr() - convert spot statistics to string depending on the SSF conversion mode.
static java.lang.String DbSpot.getPrettyPrintSpotStr(DbSpot p1)
          getPrettyPrintSpotStr() - get the pretty-print spot features of specified
static java.lang.String DbSpot.getPrettyPrintSpotStr(DbSpot p1, boolean addCCnbrFlag)
          getPrettyPrintSpotStr() - get the pretty-print spot features of specified
 java.lang.String DbPairSamples.getSpotPairStr(DbSpot sp)
          getSpotPairStr() - get the paired spot string that identifies the samples, LM sets, LM coords,, dP, dL
static DbSpot[] DbSpot.getSubListSpotsPairedWithThisSpot(DbSpot spot, int maxSublistSize)
          getSubListSpotsPairedWithThisSpot() - get a sublist of spots (in the other sample) that are paired with this spot.
 boolean DbSample.insertSpot(DbSpot r, DbSpot sp)
          insertSpot() - insert spot r BEFORE spot sp and update spotList[0:nTopSpot-1].
 boolean DbSample.pushSpot(DbSpot r)
          pushSpot() - push DbSpot spot into spotList[0:nTopSpot-1].
 boolean DbPairSamples.pushSpotPair(DbSpot rS, DbSpot sS)
          pushSpotPair() - push DbSpot spots pair into spotLists and adjust spot pairing data.
 boolean DbSample.removeSpot(DbSpot r)
          removeSpot() - remove spot from spotList[0:nTopSpot-1].
 

Constructors in O2Plib.db with parameters of type DbSpot
DbBoundary(DbSample dbSample, DbSpot dbSpot)
          DbBoundary() - Constructor
 

Uses of DbSpot in O2Plib.db.CSD
 

Fields in O2Plib.db.CSD declared as DbSpot
 DbSpot[] CSDnorm.normLSQspots
          [0:nSpotsLsq-1] list of spots used in least-square fit norm.
 

Uses of DbSpot in O2Plib.image
 

Methods in O2Plib.image that return DbSpot
static DbSpot PixFunctions.calcMeanGrayValue(DbSample dbS, int xC, int yC, int size, DbSpot bkgrdSpot)
          calcMeanGrayValue() - compute mean gray value of spot and return the values in a DbSpot instance for sample dbS with (sp.area, sp.density, sp.xMom, sp.yMom, sp.density, sp.mnDensity, sp.dMax, sp.dMin, sp.sxy) Note: the std-deviation of sp.density is saved in sp.sxy.
 

Methods in O2Plib.image with parameters of type DbSpot
static DbSpot PixFunctions.calcMeanGrayValue(DbSample dbS, int xC, int yC, int size, DbSpot bkgrdSpot)
          calcMeanGrayValue() - compute mean gray value of spot and return the values in a DbSpot instance for sample dbS with (sp.area, sp.density, sp.xMom, sp.yMom, sp.density, sp.mnDensity, sp.dMax, sp.dMin, sp.sxy) Note: the std-deviation of sp.density is saved in sp.sxy.