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Class Summary |
| Seg2Dgel |
The Seg2Dgel program is a 2D gel spot segmenter for the Open2Dprot project. |
| Sg2avg |
Class sg2avg computes pixel neighborhood average for the 2D
Gel Spot Segmenter. |
| Sg2bkg |
Class Sg2bkg computes background density of the input
gel image for the 2D gel spot segmenter. |
| Sg2cc |
Class Sg2cc computes the pixel neighborhood central core (CC)
for the 2D Gel Spot Segmenter from the averaged image (pix4). |
| Sg2data |
Class sg2data splits large saturated or near saturated spots
by Boundary, Run-Projection-Map (boundary) or Threshold methods for the
2D gel spot segmenter. |
| Sg2dbug |
Class Sg2dbug contains debug print methods for image neighbohood,
windows, etc. |
| Sg2draw |
Class Sg2draw is used to draw overlay text, dots, plus and
boundarys in segmented output images used by the Seg2Dgel. |
| Sg2drawHistogram |
Class Sg2drawHistogram is used to draw an image intensity histogram |
| Sg2fbl |
Class Sg2fbl specifies methods for manipulating the
Final Blob List (FBL) used by the 2D gel spot segmenter. |
| Sg2fnd |
Class Sg2fnd finds the next spot for the 2D Gel Spot
segmenter using a 4-neighbor definition of a spot. |
| Sg2glb |
Class Sg2glb is the base class that specifies global variables
used by all of the other Seg2Dgel 2D gel segmenter classes. |
| Sg2hash |
Class Sg2hash specifies the picture hash table used by the
2D gel spot segmenter. |
| Sg2ini |
Class sg2ini initializes data structures for the
2D Gel Spot Segmenter |
| Sg2ngh |
Class Sg2ngh gets neighborhhod data and gaussian filter
neighborhood data for 3x3, 5x5, 7x7, 13x13(17) size neighbohhoods. |
| Sg2notch |
Class Sg2notch performs a spot boundary notch analysis
for the 2D gel segmenter. |
| Sg2reportPopup |
Class Sg2reportPopup creates and displays scrollable string
text area in a popup window. |
| Sg2rest |
Class Sg2rest computes the remainder or the
Rest-of-image = (Original - segmented) used by the 2D Gel Spot Segmenter. |
| Sg2sat |
Class Sg2sat is used to propagate CC's for saturated
average gray value pixels used by the 2D gel spot segmenter. |
| Sg2showImage |
Class Sg2showImage implements a popup GUI to show images
used in the 2D Gel Spot Segmenter. |
| Sg2split |
Class sg2split splits large saturated or near saturated
spots by Boundary, Run-Projection-Map (RLM boundary) or Threshold for
the 2D gel segmenter. |
| Sg2viewImage |
Class Sg2viewImage implements a popup GUI to show images
used in the 2D Gel Spot Segmenter and an associated histogram GUI. |
| Sg2wrk |
Class Sg2wrk specifies WorkingStack used by the 2D gel segmenter
in blob finding. |