Uses of Package
Seg2Dgel

Classes in Seg2Dgel used by Seg2Dgel
Seg2Dgel
          The Seg2Dgel program is a 2D gel spot segmenter for the Open2Dprot project.
Sg2avg
          Class sg2avg computes pixel neighborhood average for the 2D Gel Spot Segmenter.
Sg2bkg
          Class Sg2bkg computes background density of the input gel image for the 2D gel spot segmenter.
Sg2cc
          Class Sg2cc computes the pixel neighborhood central core (CC) for the 2D Gel Spot Segmenter from the averaged image (pix4).
Sg2data
          Class sg2data splits large saturated or near saturated spots by Boundary, Run-Projection-Map (boundary) or Threshold methods for the 2D gel spot segmenter.
Sg2dbug
          Class Sg2dbug contains debug print methods for image neighbohood, windows, etc.
Sg2draw
          Class Sg2draw is used to draw overlay text, dots, plus and boundarys in segmented output images used by the Seg2Dgel.
Sg2drawHistogram
          Class Sg2drawHistogram is used to draw an image intensity histogram
Sg2fbl
          Class Sg2fbl specifies methods for manipulating the Final Blob List (FBL) used by the 2D gel spot segmenter.
Sg2fnd
          Class Sg2fnd finds the next spot for the 2D Gel Spot segmenter using a 4-neighbor definition of a spot.
Sg2glb
          Class Sg2glb is the base class that specifies global variables used by all of the other Seg2Dgel 2D gel segmenter classes.
Sg2hash
          Class Sg2hash specifies the picture hash table used by the 2D gel spot segmenter.
Sg2ini
          Class sg2ini initializes data structures for the 2D Gel Spot Segmenter
Sg2ngh
          Class Sg2ngh gets neighborhhod data and gaussian filter neighborhood data for 3x3, 5x5, 7x7, 13x13(17) size neighbohhoods.
Sg2notch
          Class Sg2notch performs a spot boundary notch analysis for the 2D gel segmenter.
Sg2reportPopup
          Class Sg2reportPopup creates and displays scrollable string text area in a popup window.
Sg2rest
          Class Sg2rest computes the remainder or the Rest-of-image = (Original - segmented) used by the 2D Gel Spot Segmenter.
Sg2sat
          Class Sg2sat is used to propagate CC's for saturated average gray value pixels used by the 2D gel spot segmenter.
Sg2showImage
          Class Sg2showImage implements a popup GUI to show images used in the 2D Gel Spot Segmenter.
Sg2split
          Class sg2split splits large saturated or near saturated spots by Boundary, Run-Projection-Map (RLM boundary) or Threshold for the 2D gel segmenter.
Sg2viewImage
          Class Sg2viewImage implements a popup GUI to show images used in the 2D Gel Spot Segmenter and an associated histogram GUI.
Sg2wrk
          Class Sg2wrk specifies WorkingStack used by the 2D gel segmenter in blob finding.