Class AccData

  extended by Accession.Accglb
      extended by Accession.AccData

public class AccData
extends Accglb

Class AccData is used for data output for accession data.

This code was derived and refactored from GELLAB-II cmpgl2 C language files as well as the Open2Dprot Seg2Dgel program.

This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government. As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL file. This notice must be included with the code. The Open2Dprot Mozilla and Legal files are available on

$Date: 2005/10/20 11:11:05 $ $Revision: 1.11 $
P. Lemkin, NCI-Frederick, Frederick, MD, 21702
See Also:
Open2Dprot Home

Field Summary
Fields inherited from class Accession.Accglb
acc, accDatabaseFile, accessionURL, accFile, accFormatMode, ADD_WINDUMP, ALLOW_CALIBRATION, ALLOW_SAVE_DB, applicationName, argsV, banner, bannerTitle, batchDir, bkgrdSpot, cacheDir, changedAccDBnameFlag, CONSOLE_FLAG, cs, data, DATE, dbRsample, dbSample, DBUG_APPEND, DBUG_CONSOLE, DBUG_FREE_0100, DBUG_FREE_01000, DBUG_FREE_010000, DBUG_FREE_0100000, DBUG_FREE_01000000, DBUG_FREE_020, DBUG_FREE_0200, DBUG_FREE_02000, DBUG_FREE_020000, DBUG_FREE_02000000, DBUG_FREE_04, DBUG_FREE_040, DBUG_FREE_0400, DBUG_FREE_04000, DBUG_FREE_040000, DBUG_FREE_0400000, DBUG_MAIN, DBUG_PRINT_AT, DBUG_SWITCH_ANALYSIS, DBUG_SWITCHES, dbugBitName, dBugBits, dbugBitsHelpStr, dbugBitValues, debugSwitch, defaultSwitch, demoFileList, demoSwitch, distLatchThr, docFileList, dtdSwitch, fileSeparator, fio, fourSqrtPi, ini, inPixFileRsample, inPixFileSample, inputFormatSwitch, jarFileList, jarLibrFileList, legalImageFileExtens, makeBkupCopyFlag, MAX_WEDGE_STEPS, needToSaveAccessionDataFlag, NEVER, nSwitches, OPTBKGROUND, osName, pix, pixFileExtn, ppxDir, pra, projDir, projDirSwitch, propertiesFile, propertiesFileSwitch, PUBLISH, rdbmsDir, REVISION, RSAMPLE, rsampleName, rsampleSwitch, SAMPLE, sampleName, sampleSwitch, simplePixFileRsample, simplePixFileSample, sortSpotListFlag, spfFormatMode, spotBoxSize, ssfCWX1, ssfCWX2, ssfCWY1, ssfCWY2, ssfFileRsample, ssfFileSample, ssfFormatMode, ssfInputEpilogueFileRsample, ssfInputEpilogueFileSample, ssfInputFileRsample, ssfInputFileSample, ssfInputPrefaceFileRsample, ssfInputPrefaceFileSample, startTime, sw, switchOptCBvalue, switchOptData, switchOptValue, timerSwitch, tmpDir, updateSwitch, usageSwitch, USE_DEMO_DATA, useAccFileSwitch, useCommonSpotSizeFlag, userDir, useSpotBkbrdCorrectionFlag, util, VERSION, xmlDate, xmlDBname, xmlDir
Constructor Summary
          AccData() - Constructor
Method Summary
static boolean dumpFinish()
          dumpFinish() - finish and report statistics
 void reset()
          reset() - reset any resources that must be reset for the next run of the program.
static boolean saveAllDBfiles()
          saveAllDBfiles() - save any database files that need to be saved.
Methods inherited from class Accession.Accglb
initGlb, resetGlb, showReportStatus
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail


public AccData()
AccData() - Constructor

Method Detail


public void reset()
reset() - reset any resources that must be reset for the next run of the program.


public static boolean saveAllDBfiles()
saveAllDBfiles() - save any database files that need to be saved.

makeBkupCopyFlag - - make .bak backups for any files saved.
true if succeed


public static boolean dumpFinish()
dumpFinish() - finish and report statistics

true if succeed