Accession
Class AccData

java.lang.Object
  Accession.Accglb
      Accession.AccData

public class AccData
extends Accglb

Class AccData is used for data output for accession data.

This code was derived and refactored from GELLAB-II cmpgl2 C language files as well as the Open2Dprot Seg2Dgel program.

This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government. As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL file. This notice must be included with the code. The Open2Dprot Mozilla and Legal files are available on http://Open2Dprot.sourceforge.net/.

Version:

$Date: 2005/10/20 11:11:05 $ $Revision: 1.11 $

Author:

P. Lemkin, NCI-Frederick, Frederick, MD, 21702

See Also:

Open2Dprot Home

Field Summary

Fields inherited from class Accession.Accglb

acc, accDatabaseFile, accessionURL, accFile, accFormatMode, ADD_WINDUMP, ALLOW_CALIBRATION, ALLOW_SAVE_DB, applicationName, argsV, banner, bannerTitle, batchDir, bkgrdSpot, cacheDir, changedAccDBnameFlag, CONSOLE_FLAG, cs, data, DATE, dbRsample, dbSample, DBUG_APPEND, DBUG_CONSOLE, DBUG_FREE_0100, DBUG_FREE_01000, DBUG_FREE_010000, DBUG_FREE_0100000, DBUG_FREE_01000000, DBUG_FREE_020, DBUG_FREE_0200, DBUG_FREE_02000, DBUG_FREE_020000, DBUG_FREE_02000000, DBUG_FREE_04, DBUG_FREE_040, DBUG_FREE_0400, DBUG_FREE_04000, DBUG_FREE_040000, DBUG_FREE_0400000, DBUG_MAIN, DBUG_PRINT_AT, DBUG_SWITCH_ANALYSIS, DBUG_SWITCHES, dbugBitName, dBugBits, dbugBitsHelpStr, dbugBitValues, debugSwitch, defaultSwitch, demoFileList, demoSwitch, distLatchThr, docFileList, dtdSwitch, fileSeparator, fio, fourSqrtPi, ini, inPixFileRsample, inPixFileSample, inputFormatSwitch, jarFileList, jarLibrFileList, legalImageFileExtens, makeBkupCopyFlag, MAX_WEDGE_STEPS, needToSaveAccessionDataFlag, NEVER, nSwitches, OPTBKGROUND, osName, pix, pixFileExtn, ppxDir, pra, projDir, projDirSwitch, propertiesFile, propertiesFileSwitch, PUBLISH, rdbmsDir, REVISION, RSAMPLE, rsampleName, rsampleSwitch, SAMPLE, sampleName, sampleSwitch, simplePixFileRsample, simplePixFileSample, sortSpotListFlag, spfFormatMode, spotBoxSize, ssfCWX1, ssfCWX2, ssfCWY1, ssfCWY2, ssfFileRsample, ssfFileSample, ssfFormatMode, ssfInputEpilogueFileRsample, ssfInputEpilogueFileSample, ssfInputFileRsample, ssfInputFileSample, ssfInputPrefaceFileRsample, ssfInputPrefaceFileSample, startTime, sw, switchOptCBvalue, switchOptData, switchOptValue, timerSwitch, tmpDir, updateSwitch, usageSwitch, USE_DEMO_DATA, useAccFileSwitch, useCommonSpotSizeFlag, userDir, useSpotBkbrdCorrectionFlag, util, VERSION, xmlDate, xmlDBname, xmlDir

Constructor Summary

AccData()
AccData() - Constructor

Method Summary

static boolean	dumpFinish() dumpFinish() - finish and report statistics
void	reset() reset() - reset any resources that must be reset for the next run of the program.
static boolean	saveAllDBfiles() saveAllDBfiles() - save any database files that need to be saved.

Methods inherited from class Accession.Accglb

initGlb, resetGlb, showReportStatus

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AccData

public AccData()

AccData() - Constructor

Method Detail

reset

public void reset()

reset() - reset any resources that must be reset for the next run of the program.

saveAllDBfiles

public static boolean saveAllDBfiles()

saveAllDBfiles() - save any database files that need to be saved.

Parameters:

makeBkupCopyFlag - - make .bak backups for any files saved.

Returns:

true if succeed

dumpFinish

public static boolean dumpFinish()

dumpFinish() - finish and report statistics

Returns:

true if succeed