Class CmpData

  extended by CmpSpots.Cmpglb
      extended by CmpSpots.CmpData

public class CmpData
extends Cmpglb

Class - do SPF data output for the 2D spot pairing program.

This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government. As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL file. This notice must be included with the code. The Open2Dprot Mozilla and Legal files are available on

$Date: 2005/10/20 12:20:34 $ $Revision: 1.13 $
P. Lemkin, NCI-Frederick, Frederick, MD, 21702
See Also:
Open2Dprot Home

Field Summary
Fields inherited from class CmpSpots.Cmpglb
acc, accDatabaseFile, accFile, accFormatMode, AP, applicationName, argsV, asgn, banner, bannerTitle, baseImageFileNameRsample, baseImageFileNameSample, batchDir, cacheDir, cmpspotsURL, commutativeLMSswitch, CONSOLE_FLAG, CP, cs, data, DATE, dbLM, dbRsample, dbSample, DBUG_ALL_SSF_SPOTS, DBUG_APPEND, DBUG_ASSIGN_CODES, DBUG_ASSIGN_SSF_TO_LMS, DBUG_COMPUTE_RADII, DBUG_CONSOLE, DBUG_DUMP_LM_SET_SPOTS, DBUG_DUMP_PREFACE_EPILOGUE, DBUG_DUMP_SPF, DBUG_FIND_LMS_IN_SSFS, DBUG_FREE_0200000, DBUG_FREE_04000, DBUG_INITIAL_SPOT_PAIRING, DBUG_PRINT_AT, DBUG_PRINT_FULL_NODE_INFO, DBUG_PRINT_LMS_SET_SPOTS, DBUG_PRINT_LMS_SPOT_MAPPING, DBUG_READ_LANDMARKS, DBUG_READ_SSF_DATA, DBUG_SECONDARY_PAIRING, DBUG_SPECIFIC_SPOTS, DBUG_SWITCH_ANALYSIS, DBUG_SWITCHES, dBugBits, dbugBitsHelpStr, dBugLMsetList, debugSwitch, defaultSwitch, demoFileList, demoSwitch, docFileList, dtdSwitch, EP, fileSeparator, fio, fourSqrtPi, GS, ini, inPixFileRsample, inPixFileSample, inputFormatSwitch, isCsamplePrimeSwitch, jarFileList, jarLibrFileList, landmarkDatabaseFile, latchLandmarkSpotSwitch, legalImageFileExtens, LM, LMSETCOLOR, lmsFile, lmsFormatMode, MAX_LM_LATCH_THR, maxLatchDist, nbrAltLMSSwitch, nDbugLMsetList, NEVER, nlmDB, nSwitches, OPTBKGROUND, osName, pair, pair2ndary, paramH, pix, pix1, pix2, pixFileExtn, PP, ppxDir, pra, projDir, projDirSwitch, propertiesFile, propertiesFileSwitch, ps, PUBLISH, rdbmsDir, REVISION, rRoiDbug, rRoiDbugSwitch, RSAMPLE, rsampleName, rsampleSwitch, SAMPLE, sampleName, sampleSwitch, secondaryPairingSwitch, simplePixFileRsample, simplePixFileSample, sort, SP, spfFormatMode, spfFormatSwitch, spfOutputFile, spfOutputPrefaceFile, SPOTBOXCOLOR, sRoiDbug, sRoiDbugSwitch, ssfFileRsample, ssfFileSample, ssfFormatMode, ssfInputEpilogueFileRsample, ssfInputEpilogueFileSample, ssfInputFileRsample, ssfInputFileSample, ssfInputPrefaceFileRsample, ssfInputPrefaceFileSample, startTime, sw, switchOptCBvalue, switchOptData, switchOptValue, thrPPswitch, thrSPswitch, timerSwitch, tmpDir, updateSwitch, US, usageSwitch, USE_DEMO_DATA, useAccFileSwitch, useHistGUISwitch, useLmsFileSwitch, usePercentDensitySwitch, usePopupGUISwitch, userDir, util, VERSION, xmlDir
Constructor Summary
          CmpData() - Constructor
Method Summary
 void reset()
          reset() - reset any resources that must be reset for the next run of the program.
Methods inherited from class CmpSpots.Cmpglb
get2D, get2D, initGlb, resetGlb, set2D
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail


public CmpData()
CmpData() - Constructor

Method Detail


public void reset()
reset() - reset any resources that must be reset for the next run of the program.