| CmpSpots.Cmpglb |
public static final java.lang.String |
applicationName |
"CmpSpots" |
public static final java.lang.String |
cmpspotsURL |
"http://open2dprot.sourceforge.net/CmpSpots/" |
public static final int |
DBUG_ALL_SSF_SPOTS |
4096 |
public static final boolean |
DBUG_APPEND |
true |
public static final int |
DBUG_ASSIGN_CODES |
1 |
public static final int |
DBUG_ASSIGN_SSF_TO_LMS |
2 |
public static final int |
DBUG_COMPUTE_RADII |
4 |
public static final boolean |
DBUG_CONSOLE |
true |
public static final int |
DBUG_DUMP_LM_SET_SPOTS |
131072 |
public static final int |
DBUG_DUMP_PREFACE_EPILOGUE |
262144 |
public static final int |
DBUG_DUMP_SPF |
16 |
public static final int |
DBUG_FIND_LMS_IN_SSFS |
32 |
public static final int |
DBUG_FREE_0200000 |
65536 |
public static final int |
DBUG_FREE_04000 |
2048 |
public static final int |
DBUG_INITIAL_SPOT_PAIRING |
128 |
public static final int |
DBUG_PRINT_AT |
512 |
public static final int |
DBUG_PRINT_FULL_NODE_INFO |
524288 |
public static final int |
DBUG_PRINT_LMS_SET_SPOTS |
1024 |
public static final int |
DBUG_PRINT_LMS_SPOT_MAPPING |
256 |
public static final int |
DBUG_READ_LANDMARKS |
16384 |
public static final int |
DBUG_READ_SSF_DATA |
8192 |
public static final int |
DBUG_SECONDARY_PAIRING |
32768 |
public static final int |
DBUG_SPECIFIC_SPOTS |
1048576 |
public static final int |
DBUG_SWITCH_ANALYSIS |
64 |
public static final java.lang.String |
dbugBitsHelpStr |
"Debug bits for -debug switch for the CmpSpots program -\nOpen2Dprot project 2D Spot Pairing Program\n==========================================================\n\n---------------------------------------------------------------------\n| Note: This pre-alpha level software is under construction and |\n| will change. Not all functionality described is fully implemented |\n| or fully debugged. |\n---------------------------------------------------------------------\n\nDebugging option bits used with the \'-dbug:<bits>\' command line command\n-----------------------------------------------------------------------\n\nThe following are the orthogonal -debug option code bits in octal.\nThis means you can add them together (in octal) and use that number.\n\n Octal code Methods traced\n ========== ================\nbit: 01 = assignCodes()\nbit: 02 = assignSSFtoLMS()\nbit: 04 = computeRadii()\nbit: 020 = dumpSPF()\nbit: 040 = findLMSinSSFs()\nbit: 0100 = switchAnalysis()\nbit: 0200 = initialSpotPairing() and convolveG1G2()\nbit: 0400 = print landmark DB and corresponding spot mapping\nbit: 01000 = printAt()\nbit: 02000 = cvtLMsetSpotsToStr()\nbit: 04000 = -free-\nbit: 010000 = print all SSF spots for both samples\nbit: 020000 = readSSFdata()\nbit: 040000 = readLandmarks()\nbit: 0100000 = secondarySpotPairing()\nbit: 0200000 = -free-\nbit: 0400000 = dumpLMsetSpots()\nbit: 01000000 = dumpSPFpreface() and dumpStatisticsToSPFfile\nbit: 02000000 = print full spot node info\nbit: 04000000 = debug specific (hardwired) list of spots\n=======================================================================\n\n" |
public static final int |
MAX_LM_LATCH_THR |
6 |
public static final int |
OPTBKGROUND |
50 |