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| Uses of Spot in <Unnamed> |
|---|
| Fields in <Unnamed> declared as Spot | |
|---|---|
Spot |
ImageDataMeas.curSpot
Current spot set with showMeasValue if being measured. |
private Spot |
Spot.s1
Left Spot 1 if editing both spots |
private Spot |
Spot.s2
Right Spot 2 if editing both spots |
Spot[] |
ImageDataSpotList.spotList
List of measured spots data if not null [0:nSpots-1]. |
Spot[] |
ImageDataSpotList.spotListBkup
Backup list of measured spots data if not null [0:nSpotsBkup-1]. |
Spot |
Flicker.spt
Spot structures |
| Methods in <Unnamed> that return Spot | |
|---|---|
Spot |
ImageDataSpotList.addUniqueSpotToSpotList(int nGel,
int nbr,
int nCirMask,
int circleRadius,
int xC,
int yC,
int xB,
int yB,
float area,
boolean isCalibFlag,
boolean useTotDensityFlag,
float density,
float densPrime,
float bkgrd,
float mnDens,
float totDens,
float mnDensPrime,
float mnBkgrd,
float dMax,
float dMin,
float dMaxBkgrd,
float dMinBkgrd)
addUniqueSpotToSpotList() - add spot if it is unique to the spot list else just update the spot measurement but keep the spot number if it is an existing spot if +- 1 pixel in xC and/or yC |
Spot |
ImageDataSpotList.lookupSpotInSpotListByXY(int xC,
int yC)
lookupSpotInSpotListByXY() - lookup the spot in the spotList[0:nSpots-1] if the (xC,yC) are +- 1 pixel in x and/or y. |
(package private) static Spot[] |
Spot.readState(java.lang.String gelFile,
java.lang.String iName)
readState() - Read spotList[] "spt/ |
| Methods in <Unnamed> with parameters of type Spot | |
|---|---|
boolean |
ImageDataSpotList.editSpotFromSpotList(Spot s,
boolean editOnlyIDflag)
editSpotFromSpotList() - edit the spot from the spot list if found |
boolean |
ImageDataSpotList.editSpotFromSpotList(Spot s1,
Spot s2,
boolean editOnlyIDflag)
editSpotFromSpotList() - edit the spot from the spot list if found |
boolean |
Util.getAnnotationFromServer(ImageData iData,
Spot s)
getAnnotationFromServer() - get the gel iData spot s data from proteomic web server |
static java.lang.String |
Spot.listSpotListData(java.lang.String imageName,
java.lang.String units,
Spot[] spotList,
int nSpots)
listSpotListData() - generate a string list of the spots in the spot list |
static java.lang.String |
Spot.listSpotListDataTabDelim(java.lang.String imageName,
java.lang.String unitsAbbrev,
Spot[] spotList,
int nSpots)
listSpotListDataTabDelim() - generate a tab-delimited string table of of the spots in the spot list. |
boolean |
Spot.popupSpotEditBoth(Spot s1,
Spot s2,
boolean editOnlyIDflag)
popupSpotEditBoth() - popup a spot editing function to let you edit two selected (putatively paired) spots together Edit the data in 3 columns with the field name on the left column the left image data in the middle column and the right image data in the right column. |
boolean |
ImageDataSpotList.rmvSpotFromSpotList(Spot s)
rmvSpotFromSpotList() - remove the spot from the spot list if found If the spot is at the end of the list, the reuse the spot number. |
(package private) static boolean |
Spot.writeState(java.lang.String gelFile,
java.lang.String iName,
Spot[] spotList,
int nSpots)
writeState() - Write the spotlist[] to "spt/ |
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