A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

acc - Static variable in class Landmark.Lmsglb

accDatabaseFile - Static variable in class Landmark.Lmsglb

full path Accession database file

accFile - Static variable in class Landmark.Lmsglb

Accession database file without the path.

accFormatMode - Static variable in class Landmark.Lmsglb

Accession DB file modes: Allowed: IO_FORMAT_TAB_DELIM, IO_FORMAT_XML

actionPerformed(ActionEvent) - Method in class Landmark.LmsReportPopup

actionPerformed() - Handle button clicks

actionPerformed(ActionEvent) - Method in class Landmark.LmsWizardPopup

actionPerformed() - Handle button clicks

addFocusBoxFlag - Variable in class Landmark.LmsWizardPopup

set from "Add focus box" checkbox

additionalInit() - Static method in class Landmark.LmsIni

additionalInit() - initialize other parameters now that we have the computing window, image size, bits/pixel, OD calibration, etc.

addLandmark() - Method in class Landmark.LmsWizardPopup

addLandmark() - add currently selected coordiantes as next landmark

addMenuTree(Frame, MenuBar) - Method in class Landmark.LmsReportPopup

addMenuTree() - create pull down menus in menu bar

addMenuTree(Frame, MenuBar) - Method in class Landmark.LmsWizardPopup

addMenuTree() - create pull down menus in menu bar

adjustmentValueChanged(AdjustmentEvent) - Method in class Landmark.LmsWizardPopup

adjustmentValueChanged() - handle ImageScroller scroll events.

altMod - Variable in class Landmark.LmsScrollableImagePanel

ALT/Mouse

appendTextMsg(String) - Method in class Landmark.LmsReportPopup

appendTextMsg() - append text in popup window

applicationName - Static variable in class Landmark.Lmsglb

name of the application

argsV - Static variable in class Landmark.Lmsglb

Total command list arg list originally set fro main(args)

B

banner - Static variable in class Landmark.Lmsglb

The full version data banner with todays date

bannerTitle - Static variable in class Landmark.Lmsglb

The short version data banner for popup titles

baseImageFile - Variable in class Landmark.LmsWizardPopup

base name of the image for use in the title

baseImageFileNameRsample - Static variable in class Landmark.Lmsglb

Base file name is the original Rsample input image file without the directory and without the file extension.

baseImageFileNameSample - Static variable in class Landmark.Lmsglb

Base file name is the original sample input image file without the directory and without the file extension.

batchDir - Static variable in class Landmark.Lmsglb

Batch temporary data files used in exec'ing pipeline modules directory {projDir}/batch/

buildImageGUI() - Method in class Landmark.LmsWizardPopup

buildImageGUI() - Build the ImageViewer GUI

C

cacheDir - Static variable in class Landmark.Lmsglb

Cache database directory {projDir}/cache/

cancelFlag - Variable in class Landmark.LmsReportPopup

pressed sog.

canvasHeight - Static variable in class Landmark.LmsWizardPopup

Working height of the canvas

canvasHeight - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

canvas height

canvasWidth - Static variable in class Landmark.LmsWizardPopup

Working width of the canvas

canvasWidth - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

canvas width

centerPtX - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

center point X

centerPtY - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

center point Y

changeGuiFlag - Variable in class Landmark.LmsWizardPopup

flag to indicating that the GUI may have changed and that it should be rebuilt.

cHeight - Variable in class Landmark.LmsWizardPopup

canvas height

cleanKillApplication(boolean) - Method in class Landmark.LmsReportPopup

cleanKillApplication() - close the file if needed and do a clean kill of the application

clearCurImgXY() - Method in class Landmark.LmsWizardPopup

clearCurImgXY() - clear the current Rsample and Sample coordinates

clearText() - Method in class Landmark.LmsReportPopup

clearText() - clear text in popup window

close() - Method in class Landmark.LmsReportPopup

close() - close this popup and reset flags if needed

close() - Method in class Landmark.LmsWizardPopup

close() - close this popup and reset flags

close() - Method in class Landmark.LmsWizardPopup.SeparateFlickerWindow

close() - close the window thru window listener, make it invisble Can call from parent class to close window, must set cs.separateFlickerWindowFlag separately

commutativeLMSswitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

CONSOLE_FLAG - Static variable in class Landmark.Lmsglb

controlPanel - Variable in class Landmark.LmsWizardPopup

Control panel for the main frame

createNewLandmarkDBfile(String, String) - Method in class Landmark.Landmark

createNewLandmarkDBfile() - create a new the landmark database file with the header but not the data.

cs - Static variable in class Landmark.Lmsglb

instance of the main class

cs - Variable in class Landmark.LmsReportPopup

instance of the main class

cs - Variable in class Landmark.LmsScrollableImagePanel

instance of the main Landmark class

cs - Variable in class Landmark.LmsWizardPopup

instance of the main class

csi - Variable in class Landmark.LmsScrollableImagePanel

instance of the main/calling class

ctrlMod - Variable in class Landmark.LmsScrollableImagePanel

CTRL/Mouse

ctrlShiftMod - Variable in class Landmark.LmsScrollableImagePanel

CTRL-SHIFT/Mouse

curDim - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

keep track size, resizing window

curImageLabel - Variable in class Landmark.LmsWizardPopup

current image being display during flickering

curLMS - Variable in class Landmark.LmsScrollableImagePanel

current landmark set of current spot.

cursorColor - Variable in class Landmark.LmsScrollableImagePanel

Overlay color for cursor

cWidth - Variable in class Landmark.LmsWizardPopup

canvas width

D

data - Static variable in class Landmark.Lmsglb

DATE - Static variable in class Landmark.Lmsglb

CVS Version date

dbLM - Static variable in class Landmark.Lmsglb

Landmark part of the database

dbRsample - Static variable in class Landmark.Lmsglb

Rsample state parameters read from files.

dbRsample - Variable in class Landmark.LmsWizardPopup

Reference sample

dbS - Variable in class Landmark.LmsScrollableImagePanel

instance of sample

dbS - Variable in class Landmark.LmsWizardPopup

landmark flicker sample is set by run() to either dbRsample or dbSample

dbSample - Static variable in class Landmark.Lmsglb

Sample state parameters read from files.

dbSample - Variable in class Landmark.LmsWizardPopup

Independent sample

dbSorig - Variable in class Landmark.LmsScrollableImagePanel

instance of sample

DBUB_FREE_040000 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_APPEND - Static variable in class Landmark.Lmsglb

Debugging append text flag

DBUG_COMPUTE_RADII - Static variable in class Landmark.Lmsglb

Debug code: computeRadii()

DBUG_CONSOLE - Static variable in class Landmark.Lmsglb

Debugging console text flag

DBUG_FREE_010 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_FREE_0100 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_FREE_01000 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_FREE_010000 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_FREE_0100000 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_FREE_01000000 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_FREE_020 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_FREE_0200 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_FREE_02000 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_FREE_020000 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_FREE_0200000 - Static variable in class Landmark.Lmsglb

Debug code: main()

DBUG_FREE_02000000 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_FREE_040 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_FREE_0400 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_FREE_04000 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_FREE_0400000 - Static variable in class Landmark.Lmsglb

Debug code: -free-

DBUG_PRINT_AT - Static variable in class Landmark.Lmsglb

Debug code: printAt() debugging

DBUG_SWITCH_ANALYSIS - Static variable in class Landmark.Lmsglb

DBUG_SWITCHES - Static variable in class Landmark.Lmsglb

Debugging switches

dbugBitName - Static variable in class Landmark.Lmsglb

Debug bits name from the parsed Landmark.dbug file

dBugBits - Static variable in class Landmark.Lmsglb

-DEBUG:bits

dbugBitsHelpStr - Static variable in class Landmark.Lmsglb

Debug bit options help for error messages

dbugBitValues - Static variable in class Landmark.Lmsglb

Debug bits values from the parsed Landmark.dbug file

dBugLMnbr - Static variable in class Landmark.Lmsglb

-DEBUG:bits,LMset# (not letter)

debugSwitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

DEF_FLK_DELAY - Static variable in class Landmark.LmsWizardPopup

default flicker delay 0.3 seconds

defaultSwitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

delay - Variable in class Landmark.LmsWizardPopup

delayBarLeft - Variable in class Landmark.LmsWizardPopup

scroll bar for Rsample image delay

delayBarRight - Variable in class Landmark.LmsWizardPopup

scroll bar for Sample image delay

delayLabelLeft - Variable in class Landmark.LmsWizardPopup

label for Rsample image delay

delayLabelRight - Variable in class Landmark.LmsWizardPopup

label for Sample image delay

deleteLandmark() - Method in class Landmark.LmsWizardPopup

deleteLandmark() - delete landmark of currently selected coordinates if it is a landmark.

demoFileList - Static variable in class Landmark.Lmsglb

List of demo/ files downloadable from the server

demoSwitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

dispHeight - Variable in class Landmark.LmsWizardPopup

Height of display image

dispImage - Variable in class Landmark.LmsWizardPopup

Display image

dispName - Variable in class Landmark.LmsWizardPopup

Name of image to display

dispPixChoice - Variable in class Landmark.LmsWizardPopup

Selector for image to display (Rsample, Sample)

dispWidth - Variable in class Landmark.LmsWizardPopup

Width of display image

DIST_THR - Static variable in class Landmark.LmsWizardPopup

Distance threshold in pixels from mouse (x,y) to spot centroid to find spot

DIVIDER_LOCATION - Variable in class Landmark.LmsWizardPopup

location of JsplitPane divider

docFileList - Static variable in class Landmark.Lmsglb

List of documentation files downloadable from the server

dol - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

instance of DrawOverlays

doneFlag - Variable in class Landmark.LmsReportPopup

pressed sog.

drawCircle(Graphics, int, int, int, Color) - Method in class Landmark.LmsScrollableImagePanel

drawCircle() - draw circle at the specified color and radius.

drawOverlayBordersFlag - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

for drawing a border around separate window

drawOverLays(Graphics, Image, int, int) - Method in class Landmark.LmsScrollableImagePanel

drawOverLays() - paint the scrollable image canvas which includes the image, optional ROI's, overlay spots, optional histogram that is repainted in another class.

drawTargetOverlay(Graphics) - Method in class Landmark.LmsWizardPopup.DisplayZoomedImg

drawTargetOverlay() - Draw Target Overlay in the window.

dtdSwitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

dumpFinish() - Static method in class Landmark.LmsData

dumpFinish() - finish and report statistics

dx1 - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

destination window x1 coord

dx2 - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

destination window x2 coord

dy1 - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

destination window y1 coord

dy2 - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

destination window y2 coord

dziFlicker - Variable in class Landmark.LmsWizardPopup

for displaying flickered img

dziLeft - Variable in class Landmark.LmsWizardPopup

for displaying upper left zoomed img

dziRight - Variable in class Landmark.LmsWizardPopup

for displaying upper right zoomed img

E

editMenu - Variable in class Landmark.LmsReportPopup

"Edit" pull down Menu list

editMenu - Variable in class Landmark.LmsWizardPopup

"Edit" pull down Menu list

editOptionsButton - Variable in class Landmark.LmsReportPopup

button for "Set startup options" button

editRsampleLMSFlag - Static variable in class Landmark.Lmsglb

set from (Edit | Don't edit Rsample landmarks) menu

F

fileMenu - Variable in class Landmark.LmsReportPopup

"File" pull down Menu list

fileMenu - Variable in class Landmark.LmsWizardPopup

"File" pull down Menu list

fileSeparator - Static variable in class Landmark.Lmsglb

File separator: Property("file.separator")

fio - Static variable in class Landmark.Lmsglb

flickerCB - Variable in class Landmark.LmsWizardPopup

Flicker (C-F) checkbox

flickerDelayLeft - Variable in class Landmark.LmsWizardPopup

flickerDelayRight - Variable in class Landmark.LmsWizardPopup

flickerFlag - Variable in class Landmark.LmsWizardPopup

set from "Flicker" choice

flickerTitle - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

title for rt flicker window

flickerWindFlag - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

if flicker window or rt window flag

flickerWindow - Variable in class Landmark.LmsWizardPopup

separate flicker window/frame

FOCUS_BOX_SIZE - Static variable in class Landmark.LmsWizardPopup

Size of optional focus box used to aid flickering.

focusBoxColor - Variable in class Landmark.LmsWizardPopup

optional Focus box color

fontFamily - Variable in class Landmark.LmsScrollableImagePanel

fontFamily - Variable in class Landmark.LmsWizardPopup

fourSqrtPi - Static variable in class Landmark.Lmsglb

Constant 4*sqrt(PI) constant used in computing spot volume

G

getMaximumSize() - Method in class Landmark.LmsWizardPopup.DisplayZoomedImg

getMaximumSize() - getMaximumSize, must be implemented for window to be displayed correctly.

getMinimumSize() - Method in class Landmark.LmsWizardPopup.DisplayZoomedImg

getMinimumSize() - getMinimumSize, must be implemented for window to be displayed correctly.

getPreferredSize() - Method in class Landmark.LmsScrollableImagePanel

getPreferredSize() - getPreferredSize, must be implemented for ScrollPane to be displayed correctly.

getPreferredSize() - Method in class Landmark.LmsWizardPopup.DisplayZoomedImg

getPreferredSize() - getPreferredSize, must be implemented for window to be displayed correctly.

getPreferredSize() - Method in class Landmark.LmsWizardPopup

getPreferredSize() - getPreferredSize, needed for sizing frame and ScrollPane correctly.

getReportText() - Method in class Landmark.LmsReportPopup

getReportText() - get the text from the Report popup window

getStopStatus() - Method in class Landmark.LmsReportPopup

getStopStatus() - get the stop processing flag set by pressing the "Stop processing" button

guardRegionColor - Variable in class Landmark.LmsWizardPopup

Guard region color, can be set from view menu

guiBuiltInitialFlag - Variable in class Landmark.LmsWizardPopup

build the initial GUI flag

H

helpMenu - Variable in class Landmark.LmsReportPopup

"Help" pull down Menu list

helpMenu - Variable in class Landmark.LmsWizardPopup

"Help" pull down Menu list

I

img - Variable in class Landmark.LmsScrollableImagePanel

image to display

img - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

image to display

ini - Static variable in class Landmark.Lmsglb

initGlb() - Static method in class Landmark.Lmsglb

initGlb() - intialize any resources that must be set upon startup [TODO] Could move some of the above static defs here...

initSwitchOptionsData() - Static method in class Landmark.LmsIni

initSwitchOptionsData() - init the switchOptionsData[0:(3*nData)-1] data is used by the AccReportPopup that in turn may call OptionsPopup.

inPixFileRsample - Static variable in class Landmark.Lmsglb

original Rsample input image file with full path and .tif, .tiff, .jpg, .gif or .ppx file extensions.

inPixFileSample - Static variable in class Landmark.Lmsglb

original Sample input image file with full path and .tif, .tiff, .jpg, .gif or .ppx file extensions.

inputFormatSwitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

isSuspendedFlag - Variable in class Landmark.LmsWizardPopup

runT is suspended

isValidROI(int, int, int, int) - Method in class Landmark.LmsWizardPopup

isValidROI() - check if current region of interest (ROI) is valid

isVisibleFlag - Variable in class Landmark.LmsWizardPopup

Set true if window is visible

itemStateChanged(ItemEvent) - Method in class Landmark.LmsReportPopup

itemStateChanged() - handle item state changed events NOTE: need to implement radio groups here since AWT only implements radio groups for Checkboxes, and CheckboxMenuItems.

itemStateChanged(ItemEvent) - Method in class Landmark.LmsWizardPopup

itemStateChanged() - handle item state changed events NOTE: need to implement radio groups here since AWT only implements radio groups for Checkboxes, and CheckboxMenuItems.

J

jarFileList - Static variable in class Landmark.Lmsglb

List of program .jar files downloadable from the server

jarLibrFileList - Static variable in class Landmark.Lmsglb

List of library .jar files downloadable from the server

K

keyPressed(KeyEvent) - Method in class Landmark.LmsScrollableImagePanel

keyPressed() - handle key down events

keyReleased(KeyEvent) - Method in class Landmark.LmsScrollableImagePanel

keyTyped(KeyEvent) - Method in class Landmark.LmsScrollableImagePanel

L

Landmark - package Landmark

Landmark - Class in Landmark

The Landmarking program for Open2Dprot is used to add and edit landmark data for the landmark database of sets of corresponding pairs of (x,y) landmarks for pairs of Rsample and Samples.

Landmark() - Constructor for class Landmark.Landmark

landmarkDatabaseFile - Static variable in class Landmark.Lmsglb

full path Landmark database file

landmarkEditButton - Variable in class Landmark.LmsReportPopup

button for "Landmark" button

landmarkURL - Static variable in class Landmark.Lmsglb

Hardwired Open2Dprot server connection Switch to S.F.

largeFont - Variable in class Landmark.LmsScrollableImagePanel

largeFont - Variable in class Landmark.LmsWizardPopup

legalImageFileExtens - Static variable in class Landmark.Lmsglb

List of legal sample image file extensions

lmDBcolor - Variable in class Landmark.LmsScrollableImagePanel

Overlay color for user defined landmarks

lmsColor - Variable in class Landmark.LmsScrollableImagePanel

Overlay color for spots in the currently selected landmark set

LmsData - Class in Landmark

Class LmsData is used for data output for the Landmark program.

LmsData() - Constructor for class Landmark.LmsData

LmsData() - Constructor

lmsFile - Static variable in class Landmark.Lmsglb

Landmark database file without the path.

lmsFormatMode - Static variable in class Landmark.Lmsglb

Landmark DB file modes: Allowed: IO_FORMAT_TAB_DELIM, IO_FORMAT_XML

Lmsglb - Class in Landmark

The Lmsglb class is the base class that specifies global variables used by all of the other andmark program classes.

Lmsglb() - Constructor for class Landmark.Lmsglb

lmsGUI - Variable in class Landmark.LmsReportPopup

popup Landmark Image wizard GUI

LmsIni - Class in Landmark

The LmsIni initializes data structures for the Open2Dprot Landmark program.

LmsIni() - Constructor for class Landmark.LmsIni

LmsIni() - Constructor

LmsReportPopup - Class in Landmark

The LmsReportPopup class creates and displays scrollable string text area in a popup window.

LmsReportPopup(Landmark) - Constructor for class Landmark.LmsReportPopup

LmsReportPopup() - Constructor.

LmsReportPopup(Landmark, String, String, int, int, String, String, boolean) - Constructor for class Landmark.LmsReportPopup

LmsReportPopup() - Constructor.

LmsScrollableImagePanel - Class in Landmark

The LmsScrollableImagePanel class implements a scrollable Panel GUI to display an image used in the landmarking program.

LmsScrollableImagePanel(LmsWizardPopup, DbSample, Image, int, int, Object, String) - Constructor for class Landmark.LmsScrollableImagePanel

ScrollableImageCanvas() - constructor.

LmsWizardPopup - Class in Landmark

The LmsWizardPopup class implements a popup Image Viewer GUI to show images used in the landmarking program.

LmsWizardPopup(Landmark) - Constructor for class Landmark.LmsWizardPopup

LmsWizardPopup() - Constructor

LmsWizardPopup.DisplayZoomedImg - Class in Landmark

LmsWizardPopup.DisplayZoomedImg(Image, int, int, int, int, int, int, boolean, String) - Constructor for class Landmark.LmsWizardPopup.DisplayZoomedImg

DisplayZoomedImg() - constructor.

LmsWizardPopup.SeparateFlickerWindow - Class in Landmark

LmsWizardPopup.SeparateFlickerWindow(String) - Constructor for class Landmark.LmsWizardPopup.SeparateFlickerWindow

SeparateFlickerWindow() - constructor.

logReportFlag - Variable in class Landmark.LmsWizardPopup

set from "Log report" checkbox menu item

lookupSampleEntryInAccDB(String, String, String, DbSample) - Method in class Landmark.Landmark

lookupSampleEntryInAccDB() - lookup the sample image name in the accession DB.

M

main(String[]) - Static method in class Landmark.Landmark

main() - for Landmark 2D spot-landmark program for Open2Dprot.

makeBkupCopyFlag - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

mapRelXYtoImage(MouseEvent) - Method in class Landmark.LmsScrollableImagePanel

mapRelXYtoImage() - map (x,y) Mouse in current canvas to (xImg,yImg) as well as updating the parent.

MAX_FLK_DELAY - Static variable in class Landmark.LmsWizardPopup

MAX flicker delay 3.0 seconds

maxSampleHeight - Variable in class Landmark.LmsWizardPopup

maximum original image height computed as: max(dbRsample.pixHeight,dbSample.pixHeight)

maxSampleWidth - Variable in class Landmark.LmsWizardPopup

maximum original image width computed as: max(dbRsample.pixWidth,dbSample.pixWidth)

mbar - Variable in class Landmark.LmsReportPopup

menu bar for the frame

mbar - Variable in class Landmark.LmsWizardPopup

menu bar for the frame

meanRsamplePixGray - Variable in class Landmark.LmsWizardPopup

Rsample mean pixel gray value

meanSamplePixGray - Variable in class Landmark.LmsWizardPopup

Sample mean pixel gray value

mediumFont - Variable in class Landmark.LmsScrollableImagePanel

mediumFont - Variable in class Landmark.LmsWizardPopup

MIN_FLK_DELAY - Static variable in class Landmark.LmsWizardPopup

MIN flicker delay 0.1 seconds

mouseClicked(MouseEvent) - Method in class Landmark.LmsScrollableImagePanel

mouseDragged(MouseEvent) - Method in class Landmark.LmsScrollableImagePanel

mouseDragged() - display data and set coordinates of current pixel in current image.

mouseEntered(MouseEvent) - Method in class Landmark.LmsScrollableImagePanel

mouseExited(MouseEvent) - Method in class Landmark.LmsScrollableImagePanel

mouseMoved(MouseEvent) - Method in class Landmark.LmsScrollableImagePanel

mouseMoved() - Change cursor to + when moved over this (Component)

mousePressed(MouseEvent) - Method in class Landmark.LmsScrollableImagePanel

mousePressed() - display data and set coordinates of current pixel in current image.

mouseReleased(MouseEvent) - Method in class Landmark.LmsScrollableImagePanel

ms - Variable in class Landmark.LmsReportPopup

Menu support functions using Hashtables to tack what is active

ms - Variable in class Landmark.LmsWizardPopup

Menu support hash tables

msgTextArea - Variable in class Landmark.LmsWizardPopup

Text area GUI for message rporting

N

NCOLS - Static variable in class Landmark.LmsWizardPopup

nDispPixels - Variable in class Landmark.LmsWizardPopup

# of dispImage pixels computed as dispWidth*dispHeight

needToSaveLMSdataFlag - Static variable in class Landmark.Lmsglb

Flag indicates need to save the LMS DB data since the data changed

needToSaveLMSdataFlag - Static variable in class Landmark.LmsWizardPopup

Flag indicates need to save the data

NEVER - Static variable in class Landmark.Lmsglb

NEVER and CONSOLE_FLAG - debugging variables - must not be final!

newArgv - Variable in class Landmark.LmsReportPopup

new switch options

nlmDB - Static variable in class Landmark.Lmsglb

# landmarks read from landmark database file

nonLMScolor - Variable in class Landmark.LmsScrollableImagePanel

Overlay color for spot that are NOT in the currently selected landmark set.

notDoneFlag - Variable in class Landmark.LmsWizardPopup

Set to kill the run loop

nPixelsRsample - Variable in class Landmark.LmsWizardPopup

The pixWidthRsample*pixHeightRsample

nPixelsSample - Variable in class Landmark.LmsWizardPopup

The pixWidthSample*pixHeightSample

NROWS - Static variable in class Landmark.LmsWizardPopup

size of the text area in characters

nSwitches - Static variable in class Landmark.Lmsglb

the number of Command line switches

O

oFile - Variable in class Landmark.LmsReportPopup

File to flush and close on "Kill program" if it is not null

oGifFileName - Variable in class Landmark.LmsWizardPopup

Full path of image to "Save image" in

oImage - Variable in class Landmark.LmsScrollableImagePanel

for outside/offscreen painting

openLandmarkDBfile(String, boolean) - Method in class Landmark.Landmark

openLandmarkDBfile() - open the landmark database.

OPTBKGROUND - Static variable in class Landmark.Lmsglb

Shift background grayscale away from 0 so graphics show up better...

origImgLeft - Variable in class Landmark.LmsWizardPopup

original left image

origImgRight - Variable in class Landmark.LmsWizardPopup

original right image

origPixHeight - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

original picture height

origPixWidth - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

original picture width

osName - Static variable in class Landmark.Lmsglb

name of this operating system: Property("os.name")

P

paintAll() - Method in class Landmark.LmsWizardPopup

paintAll() - repaint all image windows (zoomed and unzoomed) and the flickerWindow.

paintComponent(Graphics) - Method in class Landmark.LmsWizardPopup.DisplayZoomedImg

paintComponent() - paint the image wizard zoom panels

paintComponent(Graphics) - Method in class Landmark.LmsWizardPopup

paintComponent() -

paintPanel(Graphics, Image, int, int, boolean) - Method in class Landmark.LmsScrollableImagePanel

paintPanel() - repaint scrollable canvas in region defined by scroll bars.

paintUpperWindows() - Method in class Landmark.LmsWizardPopup

paintUpperWindows() - repaint all upper zoom windows and flickerWindow

paramH - Static variable in class Landmark.Lmsglb

parentObj - Variable in class Landmark.LmsWizardPopup

parent or calling class

pImgRsample - Variable in class Landmark.LmsWizardPopup

Rsample Image to display

pImgSample - Variable in class Landmark.LmsWizardPopup

Sample Image to display

pix - Static variable in class Landmark.Lmsglb

pixFileExtn - Static variable in class Landmark.Lmsglb

Output images are either ".gif" or ".jpg" [TODO] change this to .jpg with JPEG writer.

pixHeight - Variable in class Landmark.LmsScrollableImagePanel

img height

pixHeightLeft - Variable in class Landmark.LmsWizardPopup

left image pixel height

pixHeightRight - Variable in class Landmark.LmsWizardPopup

right image pixel height

pixHeightRsample - Variable in class Landmark.LmsWizardPopup

The width of the Rsample image

pixHeightSample - Variable in class Landmark.LmsWizardPopup

The width of the Sample image

pixRsample - Variable in class Landmark.LmsWizardPopup

Rsample Picture buffer char[] of image to display .

pixSample - Variable in class Landmark.LmsWizardPopup

Sample Picture buffer char[] of image to display .

pixWidth - Variable in class Landmark.LmsScrollableImagePanel

img width

pixWidthLeft - Variable in class Landmark.LmsWizardPopup

left image pixel width

pixWidthRight - Variable in class Landmark.LmsWizardPopup

right image pixel width

pixWidthRsample - Variable in class Landmark.LmsWizardPopup

The width of the Rsample image

pixWidthSample - Variable in class Landmark.LmsWizardPopup

The width of the Sample image

popupLmsWizard() - Method in class Landmark.LmsReportPopup

popupLmsWizard() - popup the landmark wizard GUI.

positionImageWindow() - Method in class Landmark.LmsWizardPopup

positionImageWindow() - position image window on the screen

positionReportWindow() - Method in class Landmark.LmsReportPopup

positionReportWindow() - position report window on the screen

postProcessSwitches() - Method in class Landmark.LmsIni

postProcessSwitches() - post process switches

poTitle - Variable in class Landmark.LmsReportPopup

popup options title

ppxDir - Static variable in class Landmark.Lmsglb

Original sample images directory {projDir}/ppx/

pra - Static variable in class Landmark.Lmsglb

generic popup report

preferedCanvasSize - Variable in class Landmark.LmsWizardPopup

prefered canvas size

preferedSize - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

preferred size of canvas

preferredHeight - Variable in class Landmark.LmsScrollableImagePanel

preferred size of canvas

preferredHeight - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

preferred size of canvas

preferredHeight - Variable in class Landmark.LmsWizardPopup

preferred size of canvas

preferredWidth - Variable in class Landmark.LmsScrollableImagePanel

preferred size of canvas

preferredWidth - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

preferred size of canvas

preferredWidth - Variable in class Landmark.LmsWizardPopup

preferred size of canvas

processSamples(String[]) - Method in class Landmark.Landmark

processSamples() - process the two samples.

projDir - Static variable in class Landmark.Lmsglb

Project directory that is either userDir, specified by -projDir:{path}, or extracted from the input file path it the image is in a "/ppx/" subdirectory.

projDirSwitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

propertiesFile - Static variable in class Landmark.Lmsglb

Current startup properties file containing default switches if it exists.

propertiesFileSwitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

PUBLISH - Static variable in class Landmark.Lmsglb

NOTE: overide the following debugging options if publishing on net.

Q

quit() - Method in class Landmark.LmsReportPopup

quit() - closing down the window, get rid of the frame.

R

rdbmsDir - Static variable in class Landmark.Lmsglb

RDBMS database directory {projDir}/rdbms/

readSsfImage(String, DbSample) - Method in class Landmark.Landmark

readSsfImage() - read the SSF image and set image status in the dbSample instance

reanalyzeFlag - Variable in class Landmark.LmsReportPopup

pressed sog.

rebuildOpenSampleSubmenus() - Method in class Landmark.LmsReportPopup

rebuildOpenSampleSubmenus() - rebuild the Open Rsample and Open Sample submenus from entries in the accession database.

reportFile - Variable in class Landmark.LmsReportPopup

reset() - Method in class Landmark.LmsData

reset() - reset any resources that must be reset for the next run of the program.

resetGlb() - Static method in class Landmark.Lmsglb

resetGlb() - reset any resources that must be reset for the next run of the program.

resetResources(boolean) - Static method in class Landmark.Landmark

resetResources() - reset any resources that must be reset for the next run of the program.

REVISION - Static variable in class Landmark.Lmsglb

CVS Revision

RSAMPLE - Static variable in class Landmark.Lmsglb

The index for the Rsample (Reference Sample)

rsampleCursorColor - Variable in class Landmark.LmsWizardPopup

Rsample image cursor color when flickering

rsampleName - Static variable in class Landmark.Lmsglb

Name of Rsample G1 which includes the file extension but not the full path.

rSampleSubmenu - Variable in class Landmark.LmsReportPopup

Dynamic submenu list for "Open Rsample" the value is "OpenRsampleFile:"sample-name'"

rsampleSwitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

run() - Method in class Landmark.LmsWizardPopup

run() - Flicker method to run threads and perform timing dependent operators.

runT - Variable in class Landmark.LmsWizardPopup

Flickering thread

S

SAMPLE - Static variable in class Landmark.Lmsglb

The index for the Sample to be paired with the Rsample

sampleCursorColor - Variable in class Landmark.LmsWizardPopup

Sample image cursor color when flickering

sampleName - Static variable in class Landmark.Lmsglb

Name of Sample G2 which includes the file extension but not the full path.

sampleNbrEdit - Variable in class Landmark.LmsWizardPopup

The sample for the following edit coords if not -1

sampleSubmenu - Variable in class Landmark.LmsReportPopup

Dynamic submenu list for "Open Sample" the value is "OpenSampleFile:"sample-name'"

sampleSwitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

saveAllDBfiles() - Static method in class Landmark.LmsData

saveAllDBfiles() - save any database files that need to be saved.

savedMsg - Variable in class Landmark.LmsReportPopup

message after Saved Txt into file

SCROLLER_VIEW_HEIGHT - Variable in class Landmark.LmsWizardPopup

Height of the frame

SCROLLER_VIEW_WIDTH - Variable in class Landmark.LmsWizardPopup

Width of the frame

scrollPaneHeightLeft - Variable in class Landmark.LmsWizardPopup

left scroll pane height

scrollPaneHeightRight - Variable in class Landmark.LmsWizardPopup

right scroll pane height

scrollPaneWidthLeft - Variable in class Landmark.LmsWizardPopup

left scroll pane width

scrollPaneWidthRight - Variable in class Landmark.LmsWizardPopup

right scroll pane width

separateFlickerWindowCB - Variable in class Landmark.LmsWizardPopup

checkbox for flicker separate window toggle (on/off)

separateFlickerWindowFlag - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

serialVersionUID - Static variable in class Landmark.LmsReportPopup

frame id

serialVersionUID - Static variable in class Landmark.LmsScrollableImagePanel

frame id

serialVersionUID - Static variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

frame id

serialVersionUID - Static variable in class Landmark.LmsWizardPopup.SeparateFlickerWindow

frame id

serialVersionUID - Static variable in class Landmark.LmsWizardPopup

frame id

setEnableButtons(boolean) - Method in class Landmark.LmsReportPopup

setEnableButtons() - by the flag

setEnableMenus(boolean) - Method in class Landmark.LmsReportPopup

setEnableMenus() - by the flag

setImage(Image, int, int, int) - Method in class Landmark.LmsWizardPopup.DisplayZoomedImg

setImage() - reset image center on new coords

setImage(String, int, int) - Method in class Landmark.LmsWizardPopup

setImage() - change the img coords TODO

setNewDefaultFlag - Variable in class Landmark.LmsReportPopup

pressed sog.

setNewRsampleLMSfromAnotherLMSdbPair(String, String) - Method in class Landmark.Landmark

setNewRsampleLMSfromAnotherLMSdbPair() - lookup LMS DB for specified (rsample, sample) pair and set Rsample list of spots into current dbLM LMset.

setOutFileToCloseOnKill(FileWriter) - Method in class Landmark.LmsReportPopup

setOutFileToCloseOnKill() - set the show/hide popup status

setPixDatabase(DbSample, DbSample) - Method in class Landmark.LmsWizardPopup

setPixDatabase() - change the samples to use

setRsampleByName(String) - Method in class Landmark.Landmark

setRsampleByName() - set and load the Rsample data into dbRsample

setSampleByName(String) - Method in class Landmark.Landmark

setSampleByName() - set and load the Sample data into dbSample

setSaveAsFile(String) - Method in class Landmark.LmsReportPopup

setSaveAsFile() - set SaveAs file default file name

setShow(boolean) - Method in class Landmark.LmsReportPopup

setShow() - set the show/hide popup status

setupDebugSwitches(String[]) - Static method in class Landmark.Landmark

setupDebugSwitches() - setup the debug switches

setupDemoSwitches(String[]) - Static method in class Landmark.Landmark

setupDemoSwitches() - setup the demo switches for the "gel-HM-019" (HUMAN-AML) and "gel-HM-071" (Human-ALL) samples

setupMinDefaultsSwitches(String[]) - Static method in class Landmark.Landmark

setupMinDefaultsSwitches() - add the minimum default switches.

shiftMod - Variable in class Landmark.LmsScrollableImagePanel

SHIFT/Mouse

showImageMousePositions(int, int, String) - Method in class Landmark.LmsScrollableImagePanel

showImageMousePositions() - show the image mouse positions

showLMSimageGUI() - Method in class Landmark.LmsWizardPopup

showLMSimageGUI() - show the Image Viewer GUI window

showMsg(String) - Method in class Landmark.LmsWizardPopup

showMsg() - display the msg in text area window

showPopupOptionWindow(String) - Method in class Landmark.LmsReportPopup

showPopupOptionWindow() - popup options window using the csPopupOptions GUI.

showReportStatus(String) - Static method in class Landmark.Lmsglb

showReportStatus() - display the msg in popup report line display And update the timer for the opr

showStatusFlag - Variable in class Landmark.LmsReportPopup

si - Variable in class Landmark.LmsScrollableImagePanel

side - Variable in class Landmark.LmsScrollableImagePanel

indicates left or right side by "right" or "left"

siLeft - Variable in class Landmark.LmsWizardPopup

left scroller

simplePixFileRsample - Static variable in class Landmark.Lmsglb

Simple Rsample original Rsample input image file with .tif, .tiff, .jpg, .gif or .ppx file extensions.

simplePixFileSample - Static variable in class Landmark.Lmsglb

Simple original Sample input image file with .tif, .tiff, .jpg, .gif or .ppx file extensions.

siRight - Variable in class Landmark.LmsWizardPopup

right scroller

smallFont - Variable in class Landmark.LmsScrollableImagePanel

smallFont - Variable in class Landmark.LmsWizardPopup

sog - Variable in class Landmark.LmsReportPopup

popup options GUI

sort - Static variable in class Landmark.Lmsglb

spfFormatMode - Static variable in class Landmark.Lmsglb

SPF output file modes: Allowed: IO_FORMAT_FULL, IO_FORMAT_GELLAB, IO_FORMAT_TAB_DELIM, IO_FORMAT_XML

ssfCWX1 - Static variable in class Landmark.Lmsglb

SSF computing window used with -ssfCW: to ignore spots outside of this window for both SSF input files.

ssfCWX2 - Static variable in class Landmark.Lmsglb

SSF computing window used with -ssfCW: to ignore spots outside of this window for both SSF input files.

ssfCWY1 - Static variable in class Landmark.Lmsglb

SSF computing window used with -ssfCW: to ignore spots outside of this window for both SSF input files.

ssfCWY2 - Static variable in class Landmark.Lmsglb

SSF computing window used with -ssfCW: to ignore spots outside of this window for both SSF input files.

ssfFileRsample - Static variable in class Landmark.Lmsglb

SSF input file for G1 sample (i.e., Rsample)

ssfFileSample - Static variable in class Landmark.Lmsglb

SSF input file for G2 sample (i.e., Sample)

ssfFormatMode - Static variable in class Landmark.Lmsglb

SSF input file modes: Allowed: IO_FORMAT_TAB_DELIM, IO_FORMAT_XML

ssfInputEpilogueFileRsample - Static variable in class Landmark.Lmsglb

full tab-delim G1 EPILOGUE xml/Rsample Spot Segmentation File full path

ssfInputEpilogueFileSample - Static variable in class Landmark.Lmsglb

full tab-delim G2 EPILOGUE xml/Sample Segmentation File full path

ssfInputFileRsample - Static variable in class Landmark.Lmsglb

xml/ Rsample G1 Spot Segmentation File full path

ssfInputFileSample - Static variable in class Landmark.Lmsglb

xml/ Sample G2 Spot Segmentation File full path

ssfInputPrefaceFileRsample - Static variable in class Landmark.Lmsglb

full tab-delim G1 PREFACE xml/Rsample Spot Segmentation File full path

ssfInputPrefaceFileSample - Static variable in class Landmark.Lmsglb

full tab-delim G2 PREFACE xml/Sample Spot Segmentation File full path

start() - Method in class Landmark.LmsWizardPopup

start() - start new or resume Flicker threads

startTime - Static variable in class Landmark.Lmsglb

starting time in epoch msec time

statusLineLabel - Variable in class Landmark.LmsReportPopup

Status line label

stop() - Method in class Landmark.LmsWizardPopup

stop() - stop or suspend Flicker threads [TODO] add KeepAlive code to kill it for real if time out.

stopFlag - Variable in class Landmark.LmsReportPopup

sw - Static variable in class Landmark.Lmsglb

Command line + Landmark.properties state switches

switchAnalysis(String[]) - Method in class Landmark.LmsIni

switchAnalysis() - Analyze the command line.

switchOptCBvalue - Static variable in class Landmark.Lmsglb

The switchOptcCBvalue[0:nData-1] is used by the Report Popup that in turn may call PopupOptions.

switchOptData - Static variable in class Landmark.Lmsglb

The switchOptData[0:(2*nData)-1] is used by the Report Popup that in turn may call PopupOptions.

switchOptValue - Static variable in class Landmark.Lmsglb

The switchOptValue[0:nData-1] is used by the Report Popup that in turn may call PopupOptions.

swOptCBvalue - Variable in class Landmark.LmsReportPopup

The swOptcCBvalue[0:nData-1] is used by the LmsReportPopup that in turn may call csPopupOptions.

swOptData - Variable in class Landmark.LmsReportPopup

The swOptData[0:(3*nData)-1] is used by the LmsReportPopup that in turn may call PopupOptions.

swOptValue - Variable in class Landmark.LmsReportPopup

The swOptValue[0:nData-1] is used by the LmsReportPopup that in turn may call csPopupOptions.

sx1 - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

source window x1 coord

sx2 - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

source window x2 coord

sy1 - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

source window y1 coord

sy2 - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

source window y2 coord

T

textarea - Variable in class Landmark.LmsReportPopup

Text area GUI for main report

textAreaFontSize - Variable in class Landmark.LmsReportPopup

font size

textAreaFontSize - Variable in class Landmark.LmsWizardPopup

font size

textFontFamily - Variable in class Landmark.LmsReportPopup

Text area font family

textFontFamily - Variable in class Landmark.LmsWizardPopup

font family for message window

textReport - Variable in class Landmark.LmsReportPopup

copy of text in textArea

timerSwitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

title - Variable in class Landmark.LmsReportPopup

string for title of frame

title - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

title

title - Variable in class Landmark.LmsWizardPopup.SeparateFlickerWindow

title of window

titleFlag - Variable in class Landmark.LmsWizardPopup

turn off titles on lower panels

tmpDir - Static variable in class Landmark.Lmsglb

Tmp images directory {projDir}/tmp/

tryToSaveCurLMSflag - Static variable in class Landmark.Lmsglb

Flag indicates should try to save the LMS DB data

tSize - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

target Size

U

update(Graphics) - Method in class Landmark.LmsScrollableImagePanel

update() - update without background the scrollable canvas

updateReportStatusLine(String) - Method in class Landmark.LmsReportPopup

updateReportStatusLine() - clear text in popup window

updateSwitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

updateText(String) - Method in class Landmark.LmsReportPopup

updateText() - update text in popup window

updateTitle(String) - Method in class Landmark.LmsReportPopup

updateTitle() - update title in popup window

UPPER_IMG_HEIGHT - Variable in class Landmark.LmsWizardPopup

Height of the upper img

UPPER_IMG_WIDTH - Variable in class Landmark.LmsWizardPopup

Width of the upper img

usageSwitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

USE_DEMO_DATA - Static variable in class Landmark.Lmsglb

Use the demo data by enabling the -demo flag and data.

useAccFileSwitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

useAddLMradiiFlag - Variable in class Landmark.LmsWizardPopup

set from "View LM radii" Menu CB

useDragCB - Variable in class Landmark.LmsWizardPopup

the "Use drag" checkbox

useDragFlag - Variable in class Landmark.LmsWizardPopup

set from "Use drag" checkbox

useLMnbrLabelsFlag - Variable in class Landmark.LmsWizardPopup

useLmsFileSwitch - Static variable in class Landmark.Lmsglb

The parsed of Command line switches

useLogCB - Variable in class Landmark.LmsWizardPopup

the "Use log" checkbox

useLogFlag - Variable in class Landmark.LmsWizardPopup

set from "Use log" checkbox

userDir - Static variable in class Landmark.Lmsglb

current User directory: getProperty("user.dir")+fileSeparator

useRsampleLMSFlag - Static variable in class Landmark.Lmsglb

set from (Edit | Use Rsample landmarks as fixed template) menu

useSaveImageFlag - Variable in class Landmark.LmsWizardPopup

set from "Save image" Command

useShowRadiiTableFlag - Variable in class Landmark.LmsWizardPopup

set from (View | Show radii table) menu

util - Static variable in class Landmark.Lmsglb

instance of utility class

V

VERSION - Static variable in class Landmark.Lmsglb

Manually define Version number

VIEW_HEIGHT - Variable in class Landmark.LmsWizardPopup

Height of the frame

VIEW_WIDTH - Variable in class Landmark.LmsWizardPopup

Width of the frame

viewHeight - Variable in class Landmark.LmsWizardPopup

viewMenu - Variable in class Landmark.LmsReportPopup

"View" pull down Menu list

viewMenu - Variable in class Landmark.LmsWizardPopup

"View" pull down Menu list

viewWidth - Variable in class Landmark.LmsWizardPopup

W

waitForUserClose() - Method in class Landmark.LmsReportPopup

waitForUserClose)() wait for user to press "Close" application.

windowActivated(WindowEvent) - Method in class Landmark.LmsReportPopup

windowActivated(WindowEvent) - Method in class Landmark.LmsWizardPopup.SeparateFlickerWindow

windowActivated(WindowEvent) - Method in class Landmark.LmsWizardPopup

windowClosed(WindowEvent) - Method in class Landmark.LmsReportPopup

windowClosed(WindowEvent) - Method in class Landmark.LmsWizardPopup.SeparateFlickerWindow

windowClosed(WindowEvent) - Method in class Landmark.LmsWizardPopup

windowClosing(WindowEvent) - Method in class Landmark.LmsReportPopup

windowClosing() - closing down the window, get rid of the frame.

windowClosing(WindowEvent) - Method in class Landmark.LmsWizardPopup.SeparateFlickerWindow

windowClosing() - closing down the window, called by listener

windowClosing(WindowEvent) - Method in class Landmark.LmsWizardPopup

windowClosing() - closing down the window

windowDeactivated(WindowEvent) - Method in class Landmark.LmsReportPopup

windowDeactivated(WindowEvent) - Method in class Landmark.LmsWizardPopup.SeparateFlickerWindow

windowDeactivated(WindowEvent) - Method in class Landmark.LmsWizardPopup

windowDeiconified(WindowEvent) - Method in class Landmark.LmsReportPopup

windowDeiconified(WindowEvent) - Method in class Landmark.LmsWizardPopup.SeparateFlickerWindow

windowDeiconified(WindowEvent) - Method in class Landmark.LmsWizardPopup

windowIconified(WindowEvent) - Method in class Landmark.LmsReportPopup

windowIconified(WindowEvent) - Method in class Landmark.LmsWizardPopup.SeparateFlickerWindow

windowIconified(WindowEvent) - Method in class Landmark.LmsWizardPopup

windowOpened(WindowEvent) - Method in class Landmark.LmsReportPopup

windowOpened(WindowEvent) - Method in class Landmark.LmsWizardPopup.SeparateFlickerWindow

windowOpened(WindowEvent) - Method in class Landmark.LmsWizardPopup

X

xCurRsample - Variable in class Landmark.LmsWizardPopup

the current X of the Rsample image

xCurSample - Variable in class Landmark.LmsWizardPopup

the current X of the Sample image

xEdit - Variable in class Landmark.LmsWizardPopup

The X coordinate of landmark to edit if not -1

xImg - Variable in class Landmark.LmsScrollableImagePanel

image address (x,y)+(xBase,yBase) where base address of ULHC of clipped image in image canvas used in last paint

xImg - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

image address (x,y)+(xBase,yBase)

xImg - Variable in class Landmark.LmsWizardPopup

image address (x,y)+(xBase,yBase)

xImgRight - Variable in class Landmark.LmsWizardPopup

image address (x,y)+(xBase,yBase) for using right upper window for flickering

xmlDir - Static variable in class Landmark.Lmsglb

Directory {projDir}/xml/ use to accession, landmark, SSF, SPF, CSD and other database files.

Y

yCurRsample - Variable in class Landmark.LmsWizardPopup

the current Y of the Rsample image

yCurSample - Variable in class Landmark.LmsWizardPopup

the current Y of the Sample image

yEdit - Variable in class Landmark.LmsWizardPopup

The Y coordinate of landmark to edit if not -1

yImg - Variable in class Landmark.LmsScrollableImagePanel

image address (x,y)+(xBase,yBase) where base address of ULHC of clipped image in image canvas used in last paint

yImg - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

image address (x,y)+(xBase,yBase)

yImg - Variable in class Landmark.LmsWizardPopup

image address (x,y)+(xBase,yBase)

yImgRight - Variable in class Landmark.LmsWizardPopup

image address (x,y)+(xBase,yBase) for using right upper window for flickering

Z

zoomChoice - Variable in class Landmark.LmsWizardPopup

Choice Selector for Zoom

zoomFactor - Variable in class Landmark.LmsWizardPopup.DisplayZoomedImg

zoom factor

zoomFactor - Variable in class Landmark.LmsWizardPopup

zoomFactor

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