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Constant Field Values

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O2Plib.db.*

O2Plib.db.DbAccession
public static final boolean DYNAMIC_FIELDS true
public static final java.lang.String VERSION "1.3"

O2Plib.db.O2Plib.db.DbAccession.AccContentHandler
private final boolean DEBUG_CH false

O2Plib.db.DbBaseSpot
public static final int AP 3
public static final int BF_DISPLAY_SPOT 512
public static final int BF_FAILED_SXSYR1RANGE 128
public static final int BF_FAILED_SXSYR2RANGE 256
public static final int BF_FAILED_T1AREA 2
public static final int BF_FAILED_T1DENSITY 8
public static final int BF_FAILED_T1DENSRANGE 32
public static final int BF_FAILED_T2AREA 4
public static final int BF_FAILED_T2DENSITY 16
public static final int BF_FAILED_T2DENSRANGE 64
public static final int BF_ISVALIDSPOT 1
public static final int CP 5
public static final int EP 4
public static final int GS 6
public static final int LM 7
public static final int MAX_SPOT_SUBLIST_SIZE 30
public static final int PP 2
public static final int RSAMPLE 0
public static final int SAMPLE 1
public static final int SP 1
public static final int SPOT_FEATURE_AREA 1
public static final int SPOT_FEATURE_DENS_PCT 4
public static final int SPOT_FEATURE_DENS_PRIME 3
public static final int SPOT_FEATURE_DENSITY 2
public static final int SPOT_FEATURE_MAX_DENS 7
public static final int SPOT_FEATURE_MEAN_DENSITY 6
public static final int SPOT_FEATURE_MIN_DENS 8
public static final int SPOT_FEATURE_VOLUME 5
public static final int US 0
public static final java.lang.String VERSION "1.2"

O2Plib.db.DbBoundary
public static final int BND_SMOOTHING_FILTER_WIDTH 5
public static final boolean DBUG_FULL_BND false
public static final int INITIAL_MAXBND 300
public static final java.lang.String VERSION "1.0"

O2Plib.db.DbLM
public static final int AP 3
public static final int CP 5
public static final int EP 4
public static final int GS 6
public static final int LM 7
public static final int PAIRBIT_AP 8
public static final int PAIRBIT_CP 32
public static final int PAIRBIT_EP 16
public static final int PAIRBIT_GS 64
public static final int PAIRBIT_LM 128
public static final int PAIRBIT_PP 4
public static final int PAIRBIT_SP 2
public static final int PAIRBIT_US 1
public static final int PP 2
public static final int SP 1
public static final int US 0
public static final java.lang.String VERSION "1.4"

O2Plib.db.O2Plib.db.DbLM.LmsContentHandler
private final boolean DEBUG_CH false

O2Plib.db.DbPairSamples
public static final int AP 3
public static final int CP 5
public static final int EP 4
public static final int GS 6
public static final int LM 7
public static final int PP 2
public static final int RSAMPLE 0
public static final int SAMPLE 1
public static final int SP 1
public static final java.lang.String SPF_VERSION "1.6"
public static final int US 0
public static final java.lang.String VERSION "1.5"

O2Plib.db.O2Plib.db.DbPairSamples.SpfContentHandler
private final boolean DEBUG_CH false
private final boolean DEBUG_TOP_LEVEL false

O2Plib.db.DbPspot
public static final java.lang.String VERSION "1.0"

O2Plib.db.DbSample
public static final int RSAMPLE 0
public static final int SAMPLE 1
public static final java.lang.String SSF_VERSION "1.5"
public static final java.lang.String VERSION "1.5"

O2Plib.db.O2Plib.db.DbSample.SsfContentHandler
private final boolean DEBUG_CH false

O2Plib.db.DbSpot
public static final java.lang.String VERSION "1.3"

O2Plib.db.LMset
public static final int RSAMPLE 0
public static final int SAMPLE 1
public static final java.lang.String VERSION "1.2"

O2Plib.db.CSD.CSD
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDacc
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDannotation
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDcache
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDcal
public static final int CALIB_MHZ_RT 2
public static final int CALIB_MW_PIE 1
public static final int CALIB_PIECEWISE_LINEAR 1
public static final int CALIB_SMOOTH 2
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDcond
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDexpr
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDexprList
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDfilterState
public static final int LB 0
public static final int PAIRBIT_AP 8
public static final int PAIRBIT_CP 32
public static final int PAIRBIT_EP 16
public static final int PAIRBIT_GS 64
public static final int PAIRBIT_LM 128
public static final int PAIRBIT_PP 4
public static final int PAIRBIT_SP 2
public static final int PAIRBIT_US 1
public static final int UB 1
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDglb
public static final int AP 3
public static final int BF_IS_LMS_SPOT 2
public static final int BF_ISVALIDSPOT 1
public static final int CP 5
public static final int CSD_DBTYPE_CACHE 2
public static final int CSD_DBTYPE_RDBMS 3
public static final int CSD_DBTYPE_TAB_DELIM 4
public static final int CSD_DBTYPE_UNKNOWN 0
public static final int CSD_DBTYPE_XML 1
public static final int EP 4
public static final int GS 6
public static final int LM 7
public static final float MAX_NODE_SAFTY_FACTOR 2.5f
public static final int PP 2
public static final int RSAMPLE 0
public static final int SAMPLE 1
public static final int SP 1
public static final int US 0
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDio
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDlimits
public static final int LB 0
public static final int LIMITS_COV_AREA 1024
public static final int LIMITS_COV_DENSITY 2048
public static final int LIMITS_DL 16
public static final int LIMITS_DP 32
public static final int LIMITS_MN_AREA 128
public static final int LIMITS_MN_DENS_RANGE 512
public static final int LIMITS_MN_DENSITY 256
public static final int LIMITS_MW 2
public static final int LIMITS_MZ 8
public static final int LIMITS_N_SAMPLES_PER_COND 4096
public static final int LIMITS_P_VALUE 8192
public static final int LIMITS_PIE 1
public static final int LIMITS_REL_DIST 64
public static final int LIMITS_RT 4
public static final int UB 1
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDlms
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDnorm
public static final int NORM_LOESS 5
public static final int NORM_LSQ 4
public static final int NORM_NONE 0
public static final int NORM_OTHER 6
public static final int NORM_PCT_TOT_DENS 1
public static final int NORM_RATO_MEANS 2
public static final int NORM_RATO_MEDIANS 3
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDRmap
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDRspot
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDRspotList
public static final float DEF_MIN_ACCEPTABLE_DIST 5.0f
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDsizes
public static final java.lang.String VERSION "1.0"

O2Plib.db.CSD.CSDtotals
public static final java.lang.String VERSION "1.0"

O2Plib.db.xml.PipeLineDefault
public static final java.lang.String DEFAULT_PIPELINE_XML "<?xml version=\"1.0\" encoding=\"UTF-8\"?><pipeline><!-- leave prevPipe blank for start node --><!-- leave nextPipe blank for end node --><pipe> <name>Accession</name> <label>Accession samples</label> <class>Open2Dprot.PipeAccession</class> <prevPipe></prevPipe> <nextPipe>Open2Dprot.PipeSegment</nextPipe></pipe><pipe> <name>Segment</name> <label>Segment spots in samples</label> <class>Open2Dprot.PipeSegment</class> <prevPipe>Open2Dprot.PipeAccession</prevPipe> <nextPipe>Open2Dprot.PipeLandmark</nextPipe></pipe><pipe> <name>Landmark</name> <label>Define/Edit landmarks between samples</label> <class>Open2Dprot.PipeLandmark</class> <prevPipe>Open2Dprot.PipeSegment</prevPipe> <nextPipe>Open2Dprot.PipePairSpots</nextPipe></pipe><pipe> <name>Pairspots</name> <label>Pair spots between samples</label> <class>Open2Dprot.PipePairSpots</class> <prevPipe>Open2Dprot.PipeLandmark</prevPipe> <nextPipe>Open2Dprot.PipeBuildCSD</nextPipe></pipe><pipe> <name>BuildCSD</name> <label>Build Composite Sample Database (CSD)</label> <class>Open2Dprot.PipeBuildCSD</class> <prevPipe>Open2Dprot.PipePairSpots</prevPipe> <nextPipe>Open2Dprot.PipeCSDMining</nextPipe></pipe><pipe> <name>PipeCSDMining</name> <label>Analyze Composite Sample Database (CSD)</label> <class>Open2Dprot.PipeCSDMining</class> <prevPipe>Open2Dprot.PipeBuildCSD</prevPipe> <nextPipe></nextPipe></pipe> <!--Open2Dprot.PipeAccessionOpen2Dprot.PipeSegmentOpen2Dprot.PipeLandmarkOpen2Dprot.PipePairSpotsOpen2Dprot.PipeBuildCSDOpen2Dprot.PipeCSDMining--> </pipeline>"

O2Plib.gui.*

O2Plib.gui.MenuSupport
public static final int MAX_CHKBOX_CMDS 501
public static final int MAX_CMDS 101

O2Plib.gui.PopupDialogQuery
static final int DEF_COL_SIZE 80
static final long serialVersionUID 0L

O2Plib.gui.PopupFileDialog
static final long serialVersionUID 0L

O2Plib.gui.PopupHTMLbrowser
static final long serialVersionUID 0L

O2Plib.gui.PopupNameListSelectorDialog
static final long serialVersionUID 0L

O2Plib.gui.PopupOptions
private final int MAX_CHOICES 30
private final int MAX_SLIDERS 30
private final int MAX_TEXT_FIELD_WIDTH 20
static final long serialVersionUID 0L
private final int THICKNESS 10
public final int VIEW_HEIGHT 600
public final int VIEW_WIDTH 800

O2Plib.gui.PopupTableEditDialog
private final int MAX_TEXT_FIELD_WIDTH 20
static final int MSG_COLS 40
static final int MSG_ROWS 4
static final long serialVersionUID 0L
public final int VIEW_HEIGHT 500
public final int VIEW_WIDTH 800

O2Plib.gui.PopupTextFieldDialog
static final long serialVersionUID 0L

O2Plib.gui.PopupYesNoDialogBox
static final long serialVersionUID 0L

O2Plib.image.*

O2Plib.image.DrawOverlays
public static final float MAX_ZOOM_MAG_VAL 6.0f
public static final float MIN_ZOOM_MAG_VAL 0.10000000149011612f

O2Plib.image.DrawPix
public static final int FONT4X6 0
public static final int FONT5X7 1

O2Plib.image.O2Plib.image.MedianCut
static final int HSIZE 32768
static final int MAXCOLORS 256

O2Plib.image.PixReader
private static final boolean NEVER false
public static final java.lang.String VERSION "1.0"

O2Plib.image.PixWriter
public static final java.lang.String VERSION "1.0"

O2Plib.image.PpxLoader
public static final java.lang.String VERSION "1.0"

O2Plib.image.RoiList
public static final int DEF_MAX_ROIS 10

O2Plib.image.ScrollableImage
public static final java.lang.String INVOKE_METHOD_NAME "drawOverLays"
public static final float MAX_ZOOM_MAG_VAL 6.0f
public static final float MIN_ZOOM_MAG_VAL 0.10000000149011612f
public static final int NBR_INVOKE_PARAMS 4
private final boolean PIXEL_RULERS false
static final long serialVersionUID 0L

O2Plib.image.O2Plib.image.ScrollableImage.Corner
static final long serialVersionUID 0L

O2Plib.image.O2Plib.image.ScrollableImage.ImageCanvas
static final long serialVersionUID 0L

O2Plib.image.O2Plib.image.ScrollableImage.Rule
public static final int HORIZONTAL 0
static final long serialVersionUID 0L
public static final int SIZE 30
public static final int VERTICAL 1

O2Plib.image.TiffPixelLoader
public static final java.lang.String VERSION "1.0"

O2Plib.image.WriteGifEncoder
private static final int BITS 12
private static final int EOF -1
private static final int HSIZE 5003

O2Plib.io.*

O2Plib.io.FileIO
public static final int IO_EXCEPTION 5
public static final int IO_FILE_NOT_FOUND 3
public static final int IO_FILE_NOT_READ_ENABLED 1
public static final int IO_FILE_WRITE_ERROR 2
public static final int IO_FORMAT_FULL 1
public static final int IO_FORMAT_GELLAB 2
public static final int IO_FORMAT_TAB_DELIM 3
public static final int IO_FORMAT_XML 4
public static final int IO_OK 0
public static final int IO_SECURITY_VIOLATION 4
public static final java.lang.String VERSION "1.1"

O2Plib.misc.*

O2Plib.misc.CalibrateOD
private static final boolean DBUG_DEF_DATA false
public static final int MAX_WEDGE_STEPS 25
public static final java.lang.String VERSION "1.1"

O2Plib.misc.Util
static final int MAX_STATUS_TIMES 25
public static final int SHOW_DECIMAL 0
public static final int SHOW_HEX 2
public static final int SHOW_OCTAL 1
public static final int SHOW_OD 3
public static final int WRITE_TO_BOTH 2
public static final int WRITE_TO_DISK 3
public static final int WRITE_TO_STDOUT 1

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