CmpSpots
Class CmpPairSecondary.OptimizedPair

java.lang.Object
  CmpSpots.CmpPairSecondary.OptimizedPair

Enclosing class:

CmpPairSecondary

 class CmpPairSecondary.OptimizedPair
extends java.lang.Object

Used for passing data on current optimized pair of spots

Field Summary

(package private) int	code1 code1 is old Gi spot pairing-code
(package private) int	code2 code2 is old Gi' spot pairing-code
(package private) float	dL dL is new dL - the distance from the landmark to the spot pair
(package private) float	dP dP is new dP - the distance between the spots
(package private) float	dpOld1 dpOld1 is old1 dP
(package private) float	dpOld2 dpOld2 is old2 dP
(package private) int	k Is the k'th LM set
(package private) int	kAlt kAlt is the alternate LM set that replaces the current landmark set
(package private) int	nn nn is the nn'th alternate landmark set
(package private) int	nsample nsample is sample Gi and is either RSAMPLE or SAMPLE
(package private) int	optX2 Previous optimal pair X coordinate
(package private) int	optY2 Previous optimal pair X coordinate
(package private) int	otherSample The other sample number
(package private) DbSpot	p1 p1 is Gi spot being test for a more optimal pairing
(package private) DbSpot	pKoptimal This is a more optimal (p2) spot if found, i.e.
(package private) DbSpot	pLastP1spot This is the previous Gi p1 spot in list.
(package private) int	type type is new type, i.e.

Constructor Summary

CmpPairSecondary.OptimizedPair()
OptimizedPair() - constructor

Method Summary

(package private) java.lang.String	getFullOPstr(java.lang.String title) getFullOPstr() - get full optimized pair state string
(package private) java.lang.String	getShortDPtypeOPstr(java.lang.String title) getShortDPtypeOPstr() - get shortened optimized pair state string
(package private) java.lang.String	getShortOPstr(java.lang.String title) getShortOPstr() - get shortened optimized pair state string

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

p1

DbSpot p1

p1 is Gi spot being test for a more optimal pairing

pLastP1spot

DbSpot pLastP1spot

This is the previous Gi p1 spot in list. It is needed if we move the spot from LM[k] to LM[kAlt] and need to adjust the landmark sets.

pKoptimal

DbSpot pKoptimal

This is a more optimal (p2) spot if found, i.e. not null, to be paired with p1.

k

int k

Is the k'th LM set

nn

int nn

nn is the nn'th alternate landmark set

kAlt

int kAlt

kAlt is the alternate LM set that replaces the current landmark set

nsample

int nsample

nsample is sample Gi and is either RSAMPLE or SAMPLE

otherSample

int otherSample

The other sample number

type

int type

type is new type, i.e. pairing-code

code1

int code1

code1 is old Gi spot pairing-code

code2

int code2

code2 is old Gi' spot pairing-code

optX2

int optX2

Previous optimal pair X coordinate

optY2

int optY2

Previous optimal pair X coordinate

dpOld1

float dpOld1

dpOld1 is old1 dP

dpOld2

float dpOld2

dpOld2 is old2 dP

dP

float dP

dP is new dP - the distance between the spots

dL

float dL

dL is new dL - the distance from the landmark to the spot pair

Constructor Detail

CmpPairSecondary.OptimizedPair

CmpPairSecondary.OptimizedPair()

OptimizedPair() - constructor

Method Detail

getFullOPstr

java.lang.String getFullOPstr(java.lang.String title)

getFullOPstr() - get full optimized pair state string

Parameters:

title - - optional title, else "OptimizedPair"

Returns:

state string

getShortOPstr

java.lang.String getShortOPstr(java.lang.String title)

getShortOPstr() - get shortened optimized pair state string

Parameters:

title - - optional title, else "OptimizedPair"

Returns:

state string

getShortDPtypeOPstr

java.lang.String getShortDPtypeOPstr(java.lang.String title)

getShortDPtypeOPstr() - get shortened optimized pair state string

Parameters:

title - - optional title, else "OptimizedPair"

Returns:

state string