CmpSpots
Class CmpShowImage

java.lang.Object
  java.awt.Component
      java.awt.Container
          java.awt.Window
              java.awt.Frame
                  javax.swing.JFrame
                      CmpSpots.CmpShowImage

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.lang.Runnable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants

public class CmpShowImage
extends javax.swing.JFrame
implements java.lang.Runnable, java.awt.event.ItemListener, java.awt.event.ActionListener, java.awt.event.WindowListener

Class CmpShowImage.java class implements a popup GUI to show images used in the 2D spot pairing program.

This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government. As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL file. This notice must be included with the code. The Open2Dprot Mozilla and Legal files are available on http://Open2Dprot.sourceforge.net/.

Version:

$Date: 2005/10/20 12:20:34 $ $Revision: 1.22 $

Author:

P. Lemkin, NCI-Frederick, Frederick, MD, 21702

See Also:

Open2Dprot Home, Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JFrame

javax.swing.JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame

java.awt.Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

java.awt.Checkbox	addLandmarksCB the "Add landmarks" checkbox
private java.awt.Adjustable	aH
boolean	alreadyViewedFlag flag for closing and reopening popup
private java.awt.Adjustable	aV
java.lang.String	baseImageFile base name of the image for use in the title
boolean	changeGuiFlag flag to indicating that the GUI may have changed and that it should be rebuilt.
java.awt.Panel	controlPanel Control panel for the main frame
CmpSpots	cs instance of the main class
int	currentPix current displayed img index
java.lang.String	dataUnits Data type as fct of histogram data type
java.lang.String	dispName Name of image to display after spot pairing
char[]	dispPixC Picture buffer char[] of image to display after spot pairing.
java.awt.Choice	dispPixChoice Selector for image to display after spot pairing
java.lang.String	dispPixFile File of image to display after spot pairing.
static int	DIST_THR Distance threshold in pixels from mouse (x,y) to spot centroid to find spot
boolean	drawHorizSliceFlag menu CB item to display horizontal slice
boolean	drawVertSliceFlag menu CB item to display vertical slice
java.awt.Menu	fileMenu "File" pull down Menu list
boolean	filterByAPlabelFlag menu CB item to filter spots by AP label
boolean	filterByCurLMSFlag set from "Filter by LMS" checkbox
java.awt.Checkbox	filterbyLMSCB the "Filter by LMS" Checkbox
boolean	filterByPPlabelFlag menu CB item to filter spots by PP label
boolean	filterBySPlabelFlag menu CB item to filter spots by SP label
boolean	filterByUSlabelFlag menu CB item to filter spots by US label
boolean	filterGEQactiveBinFlag menu CB item to test spots for GEQ activeBin value, else LEQ activeBin value fromt the selected histogram bin for the histogram histType spot data.
java.awt.Menu	filterMenu "Filter" pull down Menu list
java.lang.String	fontFamily
boolean	hasHistGUIflag flag to indicate that the GUI contains the Histogram sub-GUI
DrawHistogram	hCanvas Histogram Canvas to hold the image
int[]	hist full input unscaled histogram data [0:nHist-1]
static int	HIST_DL_DIST types of histogram data allowed
static int	HIST_DP_DIST types of histogram data allowed
static int	HIST_HEIGHT Height of the histogram
static int	HIST_LMS_SIZE types of histogram data allowed
static int	HIST_NONE types of histogram data allowed
static int	HIST_PAIRING_LABELS types of histogram data allowed
static int	HIST_WIDTH Width of the histogram
java.awt.Choice	histChoice "Histogram" Choice list
java.awt.Menu	histMenu "Histogram" pull down Menu list
static java.lang.String[]	histNames list of histogram data types
int	histType type of data to use with the histogram
java.awt.Font	hugeFont
java.awt.Font	humongousFont
boolean	isVisibleFlag Set true if window is visible
java.awt.Font	largeFont
boolean	logReportFlag set from "Log report" checkbox menu item
float	maxDataValue Maximum value expected for current hist[] data
(package private) java.awt.MenuBar	mbar menu bar for the frame
java.awt.Font	mediumFont
java.awt.Font	microFont
float	minDataValue Minimum value expected for current hist[] data
MenuSupport	ms Menu support functions using Hashtables to tack what is active
private java.awt.TextArea	msgTextArea Text area GUI for message rporting
(package private) static int	NCOLS
int	nHist size of input unscaled histogram[] data
private boolean	notDoneFlag Set to kill the run loop
int	nPixels The pixWidth*pixHeight
int	nPixList The size of the lists in case list contents is less than size
(package private) static int	NROWS size of the text area in characters
int	nSampleDisp Sample to display after spot pairing.
int	nsampleSelected Compute the selected sample (either RSAMPLE or SAMPLE).
java.lang.String	oGifFileName Full path of image to "Save image" in
java.awt.Image	pImg Image to display
char[][]	pixClist List of display pix names associated char[] images
java.lang.String[]	pixFileList
int	pixHeight The width of the current image
int[]	pixHeightSize List of pix widths[] associated with images
java.lang.String[]	pixMenuList list of display picture menu commands for choices
java.lang.String[]	pixNameList list of display picture names for choices
int	pixWidth The width of the current image
int[]	pixWidthSize List of pix widths[] associated with images
boolean	reportAllSpotPairsForSelectedSpotFlag set from "Report all spot pairs for selected spot" menu checkbox
java.lang.Thread	runT reposition scroller thread
static int	SCR_HEIGHT Height of the histogram
static int	SCR_WIDTH Width of the histogram
(package private) static long	serialVersionUID frame id
boolean	showCWflag
boolean	showDbugCWflag
boolean	showNDCWflag
boolean	showPixdumpCWflag
private CmpSpotsScrollableImagePanel	siCanvas ScrollableImage to hold the image and scrollers
java.awt.Font	smallFont
private java.awt.ScrollPane	sp Scroll pane to hold the image
private int	textAreaFontSize font size
private java.lang.String	textFontFamily font family for message window
boolean	useAddCwRdbugFlag set from "Add -cwRdbug ROI overlay" Menu CB
boolean	useAddCwSdbugFlag set from "Add -cwSdbug ROI overlay" Menu CB
java.awt.Checkbox	useAddLabelsCB the "Add labels" checkbox
boolean	useAddLabelsFlag set from "Add label" checkbox
boolean	useAddLandmarksFlag set from "Add Landmarks" Menu CB
boolean	useAddLMradiiFlag set from "Add LM radii" Menu CB
java.awt.Checkbox	useAddVectorCB the "Add vector" checkbox
boolean	useAddVectorFlag set from "Add vector" checkbox
java.awt.Checkbox	useDragCB the "Use drag" checkbox
boolean	useDragFlag set from "Use drag" checkbox
boolean	useFilterByBinFlag menu CB item to filter spots by testing if the histogram active bin is selected and histogram spot feature meets the active bin test
boolean	useHistGUIflag flag to use simple ImageViewer w/o histogram or full GUI with the histogram
boolean	useSaveImageFlag set from "Save image" Command
int	VIEW_HEIGHT Height of the frame with and without histogram
int	VIEW_WIDTH_NO_HIST Width of the frame without histogram
int	VIEW_WIDTH_WITH_HIST Width of the frame with histogram
int	viewHeight
java.awt.Menu	viewMenu "View" pull down Menu list
int	viewWidth
int[]	xImg array for x img coords
int[]	yImg array for y img coords
java.awt.Choice	zoomChoice zoom Choice list
int	zoomFactor zoomFactor

Fields inherited from class javax.swing.JFrame

accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

CmpShowImage(CmpSpots cs, boolean useHistGUIflag, java.lang.String baseImageFile)
CmpShowImage() - Constructor

Method Summary

void	actionPerformed(java.awt.event.ActionEvent e) actionPerformed() - Handle button clicks
void	addHistogramGUI() addHistogramGUI() - Add the histogram GUI to the ImageViewer GUI
private void	addMenuTree(java.awt.Frame f, java.awt.MenuBar mbar) addMenuTree() - create pull down menus in menu bar
void	adjustmentValueChanged(java.awt.event.AdjustmentEvent e) adjustmentValueChanged() - handle ImageScroller scroll events.
boolean	buildImageGUI() buildImageGUI() - Build the ImageViewer GUI
boolean	calcHistogram() calcHistogram() - compute histogram from image data.
boolean	calDbSpotDataMaxMinValues() calDbSpotDataMaxMinValues() - calc maxDataValue and minDataValue from the spotList[] data that is inside of the ROI if used.
void	close() close() - close this popup and reset flags
java.awt.Dimension	getPreferredSize() getPreferredSize() - getPreferredSize, needed for sizing frame and ScrollPane correctly.
private boolean	initImageGUI(java.lang.String dName) initImageGUI() - init the image gui
void	itemStateChanged(java.awt.event.ItemEvent e) itemStateChanged() - handle item state changed events NOTE: need to implement radio groups here since AWT only implements radio groups for Checkboxes, and CheckboxMenuItems.
void	paintComponent(java.awt.Graphics g) paintComponent() - repaint scrollable canvas in region defined by scroll bars
void	positionImageWindow() positionImageWindow() - position image window on the screen
void	removeHistogramGUI() removeHistogramGUI() - Remove the histogram GUI from ImageViewer GUI
void	run() run() - Wait for repaint to be finished after zoom so we can position scrollers in same position a.
boolean	setHistDataGUI(int histDataType) setHistDataGUI() - set checkbox radio button and choice selected for histogram data type
void	setImageGUI(java.lang.String imgName) setImageGUI() - set checkbox radio button and choice selected for image to be displayed
boolean	setPixDatabase(java.lang.String[] pixNameList, java.lang.String[] pixMenuList, java.lang.String[] pixFileList, char[][] pixClist, int nPixList, java.lang.String defaultPixName, int[] pixWidthSize, int[] pixHeightSize, boolean useHistGUIflag) setPixDatabase() - setup the list of predefined images available to the ImageViewer.
boolean	showImageGUI(java.lang.String dName) showImageGUI() - show the Image Viewer GUI window
void	showImgMsg(java.lang.String msg) showImgMsg() - display the msg in text area window
void	start() start() - start new thread
void	stop() stop() - stop or suspend thread
void	windowActivated(java.awt.event.WindowEvent e)
void	windowClosed(java.awt.event.WindowEvent e)
void	windowClosing(java.awt.event.WindowEvent e) windowClosing() - closing down the window, get rid of the frame.
void	windowDeactivated(java.awt.event.WindowEvent e)
void	windowDeiconified(java.awt.event.WindowEvent e)
void	windowIconified(java.awt.event.WindowEvent e)
void	windowOpened(java.awt.event.WindowEvent e)

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getJMenuBar, getLayeredPane, getRootPane, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, update

Methods inherited from class java.awt.Frame

addNotify, finalize, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setResizable, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getInputContext, getListeners, getLocale, getMostRecentFocusOwner, getOwnedWindows, getOwner, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isShowing, pack, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, setAlwaysOnTop, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setLocationByPlatform, setLocationRelativeTo, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, resize, resize, setBackground, setBounds, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

serialVersionUID

static final long serialVersionUID

frame id

See Also:

Constant Field Values

cs

public CmpSpots cs

instance of the main class

useHistGUIflag

public boolean useHistGUIflag

flag to use simple ImageViewer w/o histogram or full GUI with the histogram

baseImageFile

public java.lang.String baseImageFile

base name of the image for use in the title

changeGuiFlag

public boolean changeGuiFlag

flag to indicating that the GUI may have changed and that it should be rebuilt.

hasHistGUIflag

public boolean hasHistGUIflag

flag to indicate that the GUI contains the Histogram sub-GUI

VIEW_WIDTH_NO_HIST

public final int VIEW_WIDTH_NO_HIST

Width of the frame without histogram

See Also:

Constant Field Values

VIEW_WIDTH_WITH_HIST

public final int VIEW_WIDTH_WITH_HIST

Width of the frame with histogram

See Also:

Constant Field Values

VIEW_HEIGHT

public final int VIEW_HEIGHT

Height of the frame with and without histogram

See Also:

Constant Field Values

SCR_WIDTH

public static final int SCR_WIDTH

Width of the histogram

See Also:

Constant Field Values

SCR_HEIGHT

public static final int SCR_HEIGHT

Height of the histogram

See Also:

Constant Field Values

HIST_WIDTH

public static final int HIST_WIDTH

Width of the histogram

See Also:

Constant Field Values

HIST_HEIGHT

public static final int HIST_HEIGHT

Height of the histogram

See Also:

Constant Field Values

NROWS

static final int NROWS

size of the text area in characters

See Also:

Constant Field Values

NCOLS

static final int NCOLS

See Also:

Constant Field Values

DIST_THR

public static final int DIST_THR

Distance threshold in pixels from mouse (x,y) to spot centroid to find spot

See Also:

Constant Field Values

mbar

java.awt.MenuBar mbar

menu bar for the frame

fileMenu

public java.awt.Menu fileMenu

"File" pull down Menu list

viewMenu

public java.awt.Menu viewMenu

"View" pull down Menu list

filterMenu

public java.awt.Menu filterMenu

"Filter" pull down Menu list

histMenu

public java.awt.Menu histMenu

"Histogram" pull down Menu list

zoomChoice

public java.awt.Choice zoomChoice

zoom Choice list

zoomFactor

public int zoomFactor

zoomFactor

xImg

public int[] xImg

array for x img coords

yImg

public int[] yImg

array for y img coords

histChoice

public java.awt.Choice histChoice

"Histogram" Choice list

controlPanel

public java.awt.Panel controlPanel

Control panel for the main frame

ms

public MenuSupport ms

Menu support functions using Hashtables to tack what is active

sp

private java.awt.ScrollPane sp

Scroll pane to hold the image

aH

private java.awt.Adjustable aH

aV

private java.awt.Adjustable aV

siCanvas

private CmpSpotsScrollableImagePanel siCanvas

ScrollableImage to hold the image and scrollers

msgTextArea

private java.awt.TextArea msgTextArea

Text area GUI for message rporting

textAreaFontSize

private int textAreaFontSize

font size

textFontFamily

private java.lang.String textFontFamily

font family for message window

fontFamily

public java.lang.String fontFamily

microFont

public java.awt.Font microFont

smallFont

public java.awt.Font smallFont

mediumFont

public java.awt.Font mediumFont

largeFont

public java.awt.Font largeFont

hugeFont

public java.awt.Font hugeFont

humongousFont

public java.awt.Font humongousFont

dispPixChoice

public java.awt.Choice dispPixChoice

Selector for image to display after spot pairing

dispName

public java.lang.String dispName

Name of image to display after spot pairing

dispPixC

public char[] dispPixC

Picture buffer char[] of image to display after spot pairing. Note this is read either from the pix? variable or from the file if the pix? variable is null.

dispPixFile

public java.lang.String dispPixFile

File of image to display after spot pairing. Used if dispPixC is null.

nSampleDisp

public int nSampleDisp

Sample to display after spot pairing. Will be in the range of [0:pixNameList.length-1].

nsampleSelected

public int nsampleSelected

Compute the selected sample (either RSAMPLE or SAMPLE). BY CONVENTION: all Rsamples are even (i.e, 0, 2) all Samples are odd (i.e., 1, 3)

pixNameList

public java.lang.String[] pixNameList

list of display picture names for choices

pixMenuList

public java.lang.String[] pixMenuList

list of display picture menu commands for choices

pixFileList

public java.lang.String[] pixFileList

pixClist

public char[][] pixClist

List of display pix names associated char[] images

nPixList

public int nPixList

The size of the lists in case list contents is less than size

currentPix

public int currentPix

current displayed img index

pixWidthSize

public int[] pixWidthSize

List of pix widths[] associated with images

pixHeightSize

public int[] pixHeightSize

List of pix widths[] associated with images

pixWidth

public int pixWidth

The width of the current image

pixHeight

public int pixHeight

The width of the current image

nPixels

public int nPixels

The pixWidth*pixHeight

oGifFileName

public java.lang.String oGifFileName

Full path of image to "Save image" in

filterbyLMSCB

public java.awt.Checkbox filterbyLMSCB

the "Filter by LMS" Checkbox

filterByCurLMSFlag

public boolean filterByCurLMSFlag

set from "Filter by LMS" checkbox

isVisibleFlag

public boolean isVisibleFlag

Set true if window is visible

drawHorizSliceFlag

public boolean drawHorizSliceFlag

menu CB item to display horizontal slice

drawVertSliceFlag

public boolean drawVertSliceFlag

menu CB item to display vertical slice

filterGEQactiveBinFlag

public boolean filterGEQactiveBinFlag

menu CB item to test spots for GEQ activeBin value, else LEQ activeBin value fromt the selected histogram bin for the histogram histType spot data.

filterBySPlabelFlag

public boolean filterBySPlabelFlag

menu CB item to filter spots by SP label

filterByPPlabelFlag

public boolean filterByPPlabelFlag

menu CB item to filter spots by PP label

filterByAPlabelFlag

public boolean filterByAPlabelFlag

menu CB item to filter spots by AP label

filterByUSlabelFlag

public boolean filterByUSlabelFlag

menu CB item to filter spots by US label

useFilterByBinFlag

public boolean useFilterByBinFlag

menu CB item to filter spots by testing if the histogram active bin is selected and histogram spot feature meets the active bin test

useDragCB

public java.awt.Checkbox useDragCB

the "Use drag" checkbox

useDragFlag

public boolean useDragFlag

set from "Use drag" checkbox

reportAllSpotPairsForSelectedSpotFlag

public boolean reportAllSpotPairsForSelectedSpotFlag

set from "Report all spot pairs for selected spot" menu checkbox

useAddVectorCB

public java.awt.Checkbox useAddVectorCB

the "Add vector" checkbox

useAddVectorFlag

public boolean useAddVectorFlag

set from "Add vector" checkbox

useAddLabelsCB

public java.awt.Checkbox useAddLabelsCB

the "Add labels" checkbox

useAddLabelsFlag

public boolean useAddLabelsFlag

set from "Add label" checkbox

addLandmarksCB

public java.awt.Checkbox addLandmarksCB

the "Add landmarks" checkbox

useAddLandmarksFlag

public boolean useAddLandmarksFlag

set from "Add Landmarks" Menu CB

useAddLMradiiFlag

public boolean useAddLMradiiFlag

set from "Add LM radii" Menu CB

useAddCwRdbugFlag

public boolean useAddCwRdbugFlag

set from "Add -cwRdbug ROI overlay" Menu CB

useAddCwSdbugFlag

public boolean useAddCwSdbugFlag

set from "Add -cwSdbug ROI overlay" Menu CB

useSaveImageFlag

public boolean useSaveImageFlag

set from "Save image" Command

logReportFlag

public boolean logReportFlag

set from "Log report" checkbox menu item

viewWidth

public int viewWidth

viewHeight

public int viewHeight

pImg

public java.awt.Image pImg

Image to display

showCWflag

public boolean showCWflag

showNDCWflag

public boolean showNDCWflag

showDbugCWflag

public boolean showDbugCWflag

showPixdumpCWflag

public boolean showPixdumpCWflag

alreadyViewedFlag

public boolean alreadyViewedFlag

flag for closing and reopening popup

hCanvas

public DrawHistogram hCanvas

Histogram Canvas to hold the image

hist

public int[] hist

full input unscaled histogram data [0:nHist-1]

nHist

public int nHist

size of input unscaled histogram[] data

histType

public int histType

type of data to use with the histogram

HIST_NONE

public static final int HIST_NONE

types of histogram data allowed

See Also:

Constant Field Values

HIST_DP_DIST

public static final int HIST_DP_DIST

types of histogram data allowed

See Also:

Constant Field Values

HIST_DL_DIST

public static final int HIST_DL_DIST

types of histogram data allowed

See Also:

Constant Field Values

HIST_PAIRING_LABELS

public static final int HIST_PAIRING_LABELS

types of histogram data allowed

See Also:

Constant Field Values

HIST_LMS_SIZE

public static final int HIST_LMS_SIZE

types of histogram data allowed

See Also:

Constant Field Values

histNames

public static final java.lang.String[] histNames

list of histogram data types

dataUnits

public java.lang.String dataUnits

Data type as fct of histogram data type

minDataValue

public float minDataValue

Minimum value expected for current hist[] data

maxDataValue

public float maxDataValue

Maximum value expected for current hist[] data

runT

public java.lang.Thread runT

reposition scroller thread

notDoneFlag

private boolean notDoneFlag

Set to kill the run loop

Constructor Detail

CmpShowImage

public CmpShowImage(CmpSpots cs,
                    boolean useHistGUIflag,
                    java.lang.String baseImageFile)

CmpShowImage() - Constructor

Parameters:

cs - is an instance of the main class

useHistGUIflag - to bring up the histogram GUI as well.

baseImageFile - is the base name of the image

Method Detail

getPreferredSize

public java.awt.Dimension getPreferredSize()

getPreferredSize() - getPreferredSize, needed for sizing frame and ScrollPane correctly.

Overrides:

getPreferredSize in class java.awt.Container

Returns:

frame size

setPixDatabase

public boolean setPixDatabase(java.lang.String[] pixNameList,
                              java.lang.String[] pixMenuList,
                              java.lang.String[] pixFileList,
                              char[][] pixClist,
                              int nPixList,
                              java.lang.String defaultPixName,
                              int[] pixWidthSize,
                              int[] pixHeightSize,
                              boolean useHistGUIflag)

setPixDatabase() - setup the list of predefined images available to the ImageViewer. All images must be the same heightXwidth.

 Image names BY CONVENTION:
 all Rsamples are even (i.e, 0, 2, 4)
 all Samples are odd (i.e., 1, 3, 5)

Parameters:

pixNameList - is the list of display picture names for choices/menus

pixMenuList - is the list of display picture menu cmds

pixFileList - is list of associated file names if any

pixClist - is list of the associate char[] images

nPixList - is size of the lists in case list contents is less than size

defaultPixName - is the default pix name

pixWidthSize - is widths of all images

pixHeightSize - is heights of all images

useHistGUIflag - to bring up the histogram GUI as well.

Returns:

true if succeed

initImageGUI

private boolean initImageGUI(java.lang.String dName)

initImageGUI() - init the image gui

Parameters:

dName - is the image to display

Returns:

true if succeed

showImageGUI

public boolean showImageGUI(java.lang.String dName)

showImageGUI() - show the Image Viewer GUI window

Returns:

true if succeed

addHistogramGUI

public void addHistogramGUI()

addHistogramGUI() - Add the histogram GUI to the ImageViewer GUI

removeHistogramGUI

public void removeHistogramGUI()

removeHistogramGUI() - Remove the histogram GUI from ImageViewer GUI

buildImageGUI

public boolean buildImageGUI()

buildImageGUI() - Build the ImageViewer GUI

addMenuTree

private void addMenuTree(java.awt.Frame f,
                         java.awt.MenuBar mbar)

addMenuTree() - create pull down menus in menu bar

Parameters:

f - is frame

mbar - is MenuBar

showImgMsg

public void showImgMsg(java.lang.String msg)

showImgMsg() - display the msg in text area window

Parameters:

msg - to display

positionImageWindow

public void positionImageWindow()

positionImageWindow() - position image window on the screen

close

public void close()

close() - close this popup and reset flags

windowClosing

public void windowClosing(java.awt.event.WindowEvent e)

windowClosing() - closing down the window, get rid of the frame.

Specified by:

windowClosing in interface java.awt.event.WindowListener

Parameters:

e - is window closing event

See Also:

close()

windowOpened

public void windowOpened(java.awt.event.WindowEvent e)

Specified by:

windowOpened in interface java.awt.event.WindowListener

windowActivated

public void windowActivated(java.awt.event.WindowEvent e)

Specified by:

windowActivated in interface java.awt.event.WindowListener

windowClosed

public void windowClosed(java.awt.event.WindowEvent e)

Specified by:

windowClosed in interface java.awt.event.WindowListener

windowDeactivated

public void windowDeactivated(java.awt.event.WindowEvent e)

Specified by:

windowDeactivated in interface java.awt.event.WindowListener

windowDeiconified

public void windowDeiconified(java.awt.event.WindowEvent e)

Specified by:

windowDeiconified in interface java.awt.event.WindowListener

windowIconified

public void windowIconified(java.awt.event.WindowEvent e)

Specified by:

windowIconified in interface java.awt.event.WindowListener

paintComponent

public void paintComponent(java.awt.Graphics g)

paintComponent() - repaint scrollable canvas in region defined by scroll bars

Parameters:

g - is graphics context

calDbSpotDataMaxMinValues

public boolean calDbSpotDataMaxMinValues()

calDbSpotDataMaxMinValues() - calc maxDataValue and minDataValue from the spotList[] data that is inside of the ROI if used.

calcHistogram

public boolean calcHistogram()

calcHistogram() - compute histogram from image data. The dynamic range is determined by the actual data.

setImageGUI

public void setImageGUI(java.lang.String imgName)

setImageGUI() - set checkbox radio button and choice selected for image to be displayed

Parameters:

imgName - is the name name

setHistDataGUI

public boolean setHistDataGUI(int histDataType)

setHistDataGUI() - set checkbox radio button and choice selected for histogram data type

Parameters:

r - is the radix code

adjustmentValueChanged

public void adjustmentValueChanged(java.awt.event.AdjustmentEvent e)

adjustmentValueChanged() - handle ImageScroller scroll events. Handle ImageScroller scroll events & cause repaint of canvas. If we are using the scroll bar for this canvas, then set the obj position for use by other canvas for the same image. Handle the delay scrollbar as well if it exists.

Parameters:

e - is adjustment event for scroll bars

itemStateChanged

public void itemStateChanged(java.awt.event.ItemEvent e)

itemStateChanged() - handle item state changed events NOTE: need to implement radio groups here since AWT only implements radio groups for Checkboxes, and CheckboxMenuItems.

Specified by:

itemStateChanged in interface java.awt.event.ItemListener

Parameters:

e - is ItemEvent

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

actionPerformed() - Handle button clicks

Specified by:

actionPerformed in interface java.awt.event.ActionListener

Parameters:

e - is action evet

start

public void start()

start() - start new thread

run

public void run()

run() - Wait for repaint to be finished after zoom so we can position scrollers in same position a.

Specified by:

run in interface java.lang.Runnable

stop

public void stop()

stop() - stop or suspend thread